3300008126: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763961826 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008126
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053177 | Ga0114844
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763961826 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 154487559
• Sequencing Scaffolds: 21
• Novel Protein Genes: 22
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F041827	Metagenome	159	Y
F043235	Metagenome	156	N
F043990	Metagenome	155	N
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F054110	Metagenome	140	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F064819	Metagenome	128	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F084342	Metagenome	112	N
F089056	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114844_1000001	All Organisms → cellular organisms → Bacteria	761008
Ga0114844_1000028	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	112653
Ga0114844_1000634	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	21415
Ga0114844_1001482	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	12840
Ga0114844_1002434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	9225
Ga0114844_1002771	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	8489
Ga0114844_1003663	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	6925
Ga0114844_1004470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	5946
Ga0114844_1005013	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5439
Ga0114844_1005920	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4732
Ga0114844_1005959	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Cloacibacterium → Cloacibacterium normanense	4704
Ga0114844_1006568	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	4354
Ga0114844_1006819	Not Available	4206
Ga0114844_1011161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	2645
Ga0114844_1012967	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2275
Ga0114844_1016030	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1823
Ga0114844_1016561	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1761
Ga0114844_1016654	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1750
Ga0114844_1021385	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1332
Ga0114844_1032609	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	847
Ga0114844_1041817	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	648

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114844_1000001	Ga0114844_100000183	F046432	MQMSESRLGEVISKFQMPQDRYLIEQEGSFGRGEFFWVIKNQTTHQKYLLMNTYSHHGVESEVEFYREQGFDNLEAIPRRIETLEIASDAEDEISKYLFGFYSIFEIKS*
Ga0114844_1000028	Ga0114844_10000287	F043235	MDEVVPSDKGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0114844_1000634	Ga0114844_10006345	F077403	MDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYKERERRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFVPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGLVRGDSIWIEM*
Ga0114844_1001482	Ga0114844_100148216	F030786	MLVVMIVTGSLQLLLKNGSAAKGGNATGAKKISLADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPRLFLLYQSLKVDC*
Ga0114844_1002434	Ga0114844_10024345	F046431	MLKKVIQKRVKVISIIIMIIAYSSTIISNAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGASTFETIGLTDFNNIDEEVKVLNVYPVPTAVYNTPNVQVTYLDGTSEVIPKTALLKVWMEGRNSNRRWKYN*
Ga0114844_1002771	Ga0114844_10027717	F077403	MNTIMLLLRRLVLIILLLPSMCTVYAEDRISVHFEVRWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM*
Ga0114844_1003663	Ga0114844_10036631	F058221	MRNKMGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLKIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI*
Ga0114844_1004470	Ga0114844_10044702	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKAYKGGD*
Ga0114844_1005013	Ga0114844_10050135	F041827	MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEEKLVLASLYEFGSNVRFQYKNENEINRMTIDGPHREASMDFEYDTYGRIVKERRFDHKSDYGETNITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRKFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYQYSYDKGKSHDNDYLEIENVTVYEKSHNDPTHNNDLYSVSPARFYTKEK*
Ga0114844_1005920	Ga0114844_10059201	F089056	MVNLINSKFNPLIIKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDV
Ga0114844_1005959	Ga0114844_10059591	F043990	MIKKLGIIFTFGVIILGIAVYANHKIESSAIEREFGVNMSNMNIDEKYRKEEWALNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFINITNGYYKYIGDENDDWNFGILIVDTTRKEICIYNQIF*
Ga0114844_1006568	Ga0114844_10065681	F061927	MKNPIFILSVILILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCIGK*
Ga0114844_1006819	Ga0114844_10068193	F022002	MLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIIRTEGTQAGSDEQAYAVKGLKYARRSTLLAGLYFYKGHLRRIFFIFDDLDVLEQIESELEDKYGMMIESEGTSKSKSKGFFDAFTTLEVVRNFEYEGHSMFKDAYIAYTDLELERARSAEKESEI*
Ga0114844_1011161	Ga0114844_10111615	F063778	LMPETISEGAQQKLLQQLQNALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDPPPED*
Ga0114844_1012967	Ga0114844_10129675	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSY
Ga0114844_1016030	Ga0114844_10160301	F070224	TAWSQGYNAPDSIYVATGAVYIPPISGEPIYLLASPLRPVKTRGSKIRTRDWVKADYSNQNNLIIFGFGDSLVLENRFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHDKKADRYYKYRIALVIYMDYDHPEACIIH*
Ga0114844_1016030	Ga0114844_10160302	F070224	MRRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLLASPLKSGHTPGHKLRTRDWVKVDYSDRNNIIIMGFGDSLVIENLFIYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTRRSSGEVNRWQHLHLFVVEHDKKAGRYYKYRIALVIYMDYNHPEACIIH*
Ga0114844_1016561	Ga0114844_10165611	F084342	LGGYLAVPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHQRHILGICKEE*
Ga0114844_1016654	Ga0114844_10166543	F080165	MKSIKILLLLLSLIACNNKTKTISTLDLEKTIIGYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQNPQLAWVHYPYIRNKKTKQEYSIDEDGPMGGRYIIYGDSLYISNHYNIYEKDSLKYTFTRYILR*
Ga0114844_1021385	Ga0114844_10213852	F059076	MTHKILLLGLLLGGVSINAQTINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPIYSKNVGSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTIDNVNGDYIRKFDTGIDYDKYAVAIMSAIFKMPDPSSGKIVMMRAGNGVIPNVDFGGGKYGVTTAPATVLLKKTQLTNNWEIHADYPNIGPYEFPSGSTSAGQLVNGKWIMTLLVGKKEAVNFTELNFNQGGSPEGVGNSNTTYATQLQNFLKTLE*
Ga0114844_1032609	Ga0114844_10326091	F081454	VLLLFITSASFVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQSNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSIITQQKIK*
Ga0114844_1041817	Ga0114844_10418171	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKYK*