3300008102: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 404239096 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008102
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053103 | Ga0114249
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 404239096 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 133971712
• Sequencing Scaffolds: 21
• Novel Protein Genes: 24
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	10
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F040685	Metagenome	161	N
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F051213	Metagenome	144	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F071329	Metagenome	122	N
F077405	Metagenome	117	N
F077781	Metagenome / Metatranscriptome	117	N
F080165	Metagenome	115	N
F092231	Metagenome	107	Y
F097490	Metagenome	104	N
F097525	Metagenome	104	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114249_1000009	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	86977
Ga0114249_1000011	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	82030
Ga0114249_1000019	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	71577
Ga0114249_1000034	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	60764
Ga0114249_1000071	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	42922
Ga0114249_1000090	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	37833
Ga0114249_1000156	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	29078
Ga0114249_1000603	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	14520
Ga0114249_1002277	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6435
Ga0114249_1002918	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5525
Ga0114249_1003034	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	5391
Ga0114249_1003380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	5044
Ga0114249_1004682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	4016
Ga0114249_1011453	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2038
Ga0114249_1012311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1924
Ga0114249_1020547	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1255
Ga0114249_1028289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	962
Ga0114249_1029506	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	929
Ga0114249_1037750	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	758
Ga0114249_1048952	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	609
Ga0114249_1049699	All Organisms → cellular organisms → Bacteria	601

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114249_1000009	Ga0114249_100000928	F063777	LKVLNIKISALPPENNSFCMKLILYLCIPFLLIFGILFLIGWGIYSGINSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCVKSNEHLDDDGYIFYKLTDKKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKTLGKSRFWLILKTFFG*
Ga0114249_1000009	Ga0114249_100000946	F097490	VFLKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMAKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0114249_1000011	Ga0114249_10000113	F042387	MKRIILFFMAGLFLVSCSRENDKMNDETLANSAKMQLPTKVTIAENNKIISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNRKLSSVIDEVVISDSGIQYKRVVTREYSYNGSEVLVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVIDEEVTYDAKNSSYKNIKGFPVLAVEFCGLDKDENTIADYMNFRWVNHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKAKLDINNQTVTTMVYEYNK*
Ga0114249_1000019	Ga0114249_100001943	F080165	MKNKKFLLAILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*
Ga0114249_1000034	Ga0114249_100003438	F061925	MSWEYSFNLDSEESVSLVVMDLKNCELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0114249_1000034	Ga0114249_100003459	F097525	MRQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISVDKEKSTEIGFIEPELAFEYQNKKLTVLLCYDVAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKRE*
Ga0114249_1000071	Ga0114249_100007143	F071329	MRPRYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED*
Ga0114249_1000090	Ga0114249_100009038	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYEGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0114249_1000156	Ga0114249_100015621	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEFSSFGGRAVYSSRYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQDFDGQDEVIIIKTDKKTYRKMNARGNDHDREVWYSLLQIIAKEFGKKSIYE*
Ga0114249_1000603	Ga0114249_100060317	F061927	MKNSIFILSAMFILGACSSDSAQKVTEKIKNAYSDGLRKTFIEEGVKSCIKNSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0114249_1002277	Ga0114249_10022777	F043990	MIKKLGIIFTFGVIILGIVVYANHKIERSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKIIILTYDQLDSSFTKLNKLPIKEDLPPNRIPKQFLNITNGYYKYVVDENDDWNLGILIVDTTRKEICIYYQIL*
Ga0114249_1002918	Ga0114249_10029181	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK*
Ga0114249_1003034	Ga0114249_10030346	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRNLKDLCKYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKNINNKKKQYARY*
Ga0114249_1003380	Ga0114249_10033807	F092231	MIIFPPQEFITWANALAQFPWPIQLNDFLPYAEQLGWKPTSRPTWFNVLPDNDYALTNISSDRDGNVRNLFLPMASDETEDDEGAAELNDHFASCVVAGRKEWGEPFLLEAGDGPSVTWRFLGDMFAQVTSGRWSVLFNFFTPEGRRQFL*
Ga0114249_1003380	Ga0114249_10033808	F092231	MIIFAPQEFITWVNMLVQFPWPIQVDDFVPYAERLGWTPTPRPTWFNVNANNDTRNVILGDDRSGNVRDLFLSMARNEAEDDEGAVELNDHFVSCVAAGRKAWGEPFLLEAGDGPSVTWRFPGDMFAQVTSGRWSVLFNFFTPEGRRQFL*
Ga0114249_1004682	Ga0114249_10046821	F063778	MPETISEGAKQQLLQQLQDALGLVENADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGHLKSCADQIEYAISSIKAIPLDPPPED*
Ga0114249_1011453	Ga0114249_10114533	F061927	MKKSIFILSVMFILGACSSDSAQKATEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDNRIEKAISSCIGE*
Ga0114249_1012311	Ga0114249_10123111	F077405	GRALPTELFPHLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQK*
Ga0114249_1020547	Ga0114249_10205472	F051213	MNLYKILGALILALSFVFTSCDWVGNEPTIEGDRYKTFDSSAQRKSFRVVNASGKRYNHKVDWDIVGIKQLWVKTYLTKKVDTLSNGDLKISYDWVSFTVKERKSVIEVEVQKNETGQDRSVFFVTSNNRTQSHRPNIVVTQKAK*
Ga0114249_1028289	Ga0114249_10282892	F092231	MIIFSPQEFITWTNRLVQFPWPIQLKDFPPYAEKLGWKPTSLPDEFGVCPDKDDEITILSSDRDGNVRNLFLYMASNEAEDDEGAAEMNDHFVSCVATGRKAWGEPFLLEAGDGPGVTWRFPGDMFSQVTGGFTAVLFNFFTPEGRRQFL*
Ga0114249_1029506	Ga0114249_10295061	F043990	VVYANHKIERSWIEGEFGVNMNIDEKYREEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGMLIVDTTRKEICIYNQIL*
Ga0114249_1037750	Ga0114249_10377502	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDKFKKLRDGPSEQAVDGQDEVIIIKTDKKTYRKMNAYSNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0114249_1048952	Ga0114249_10489521	F077781	SSWAPARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGDLSVRTADSLYLGFPRPHPGTPGLGRFWPYLALQSLSETPSHARMPRVTVARTSPATLEISPLRAAT*
Ga0114249_1049699	Ga0114249_10496992	F040149	VADEGAKEFRWKVLIEEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLTPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETVVMQLLNIHRMF*