3300008070: Wastewater microbial communities from the hospital sewers in Singapore - Hospital 2

Overview

Basic Information

• IMG/M Taxon OID: 3300008070
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118183 | Gp0131406 | Ga0110938
• Sample Name: Wastewater microbial communities from the hospital sewers in Singapore - Hospital 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 183130469
• Sequencing Scaffolds: 6
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Microbial Communities From The Hospital Sewers
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From The Hospital Sewers

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore
• Coordinates
  • Lat. (^o): 1.3
  • Long. (^o): 103.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F052660	Metagenome	142	N
F069722	Metagenome / Metatranscriptome	123	Y
F076189	Metagenome	118	N
F090333	Metagenome / Metatranscriptome	108	Y
F094005	Metagenome / Metatranscriptome	106	N
F101356	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0110938_1006692	All Organisms → cellular organisms → Bacteria → Proteobacteria	516
Ga0110938_1032054	All Organisms → cellular organisms → Bacteria	2137
Ga0110938_1044120	All Organisms → Viruses → Predicted Viral	1439
Ga0110938_1054352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	898
Ga0110938_1056932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1965
Ga0110938_1072155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1867

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0110938_1006692	Ga0110938_10066921	F069722	MRVRLTAELDPKAKRERPDLKTGAAHEKALGHGSGAALQ
Ga0110938_1032054	Ga0110938_10320544	F032312	MPKIKDYDEDLSAPKILRRRDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0110938_1032054	Ga0110938_10320545	F094005	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDETTEKVITLDKKLKKLIEKLNE*
Ga0110938_1044120	Ga0110938_10441202	F090333	RVFYKNGKWGTTYDTPAAKNTVEILNSSSLARQFIANISKFSGIPPFKIKIPTTKSGLKEDGAVPLDVMKAYFEQPSVNRYIANQQNYNLGNVVTEHYTKGKAEPAYYMQAGDDFYLISKTDPLKLTQVHNVPTLSGFGDFKVRVSTRSEFYEVQAEIKITKMPNSQFSLKPGTKKKNPFMV*
Ga0110938_1054352	Ga0110938_10543521	F052660	HVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIVLPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNS*
Ga0110938_1056932	Ga0110938_10569324	F076189	MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLHAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL*
Ga0110938_1072155	Ga0110938_10721551	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDDYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF*
Ga0110938_1072155	Ga0110938_10721553	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENTCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0110938_1075562	Ga0110938_10755623	F101356	MYVLWIKNGNPILINKEDLAQVVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*