3300008065: Wastewater microbial communities from the domestic sewers in Singapore - Site 3

Overview

Basic Information

• IMG/M Taxon OID: 3300008065
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118187 | Gp0131418 | Ga0110935
• Sample Name: Wastewater microbial communities from the domestic sewers in Singapore - Site 3
• Sequencing Status: Permanent Draft
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 136567795
• Sequencing Scaffolds: 30
• Novel Protein Genes: 32
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
Not Available	16
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → Tenacibaculum finnmarkense	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → Rhodoferax koreense	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Microbial Communities From The Domestic Sewers
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From The Domestic Sewers

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore
• Coordinates
  • Lat. (^o): 1.3
  • Long. (^o): 103.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002371	Metagenome / Metatranscriptome	566	Y
F003622	Metagenome / Metatranscriptome	476	Y
F004010	Metagenome / Metatranscriptome	457	Y
F004339	Metagenome / Metatranscriptome	443	Y
F009686	Metagenome / Metatranscriptome	314	Y
F010914	Metagenome / Metatranscriptome	297	Y
F013948	Metagenome / Metatranscriptome	267	Y
F015419	Metagenome / Metatranscriptome	255	Y
F017991	Metagenome / Metatranscriptome	237	Y
F018007	Metagenome / Metatranscriptome	237	Y
F023098	Metagenome / Metatranscriptome	211	Y
F024268	Metagenome / Metatranscriptome	206	Y
F024972	Metagenome / Metatranscriptome	203	Y
F029893	Metagenome / Metatranscriptome	187	Y
F038145	Metagenome / Metatranscriptome	166	Y
F040153	Metagenome / Metatranscriptome	162	Y
F052550	Metagenome	142	Y
F058173	Metagenome / Metatranscriptome	135	N
F064603	Metagenome / Metatranscriptome	128	Y
F064659	Metagenome	128	Y
F071737	Metagenome	122	Y
F078624	Metagenome / Metatranscriptome	116	N
F078696	Metagenome / Metatranscriptome	116	N
F082705	Metagenome / Metatranscriptome	113	Y
F082719	Metagenome / Metatranscriptome	113	Y
F085587	Metagenome	111	Y
F087001	Metagenome	110	Y
F103371	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0110935_1001339	All Organisms → cellular organisms → Bacteria	18823
Ga0110935_1001433	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	731
Ga0110935_1001435	Not Available	551
Ga0110935_1001961	Not Available	1003
Ga0110935_1002100	Not Available	1272
Ga0110935_1002820	Not Available	1620
Ga0110935_1004094	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	587
Ga0110935_1005513	Not Available	1019
Ga0110935_1009834	Not Available	2350
Ga0110935_1011158	Not Available	634
Ga0110935_1014426	All Organisms → Viruses → Predicted Viral	4328
Ga0110935_1015290	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	838
Ga0110935_1019960	Not Available	667
Ga0110935_1020892	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012	879
Ga0110935_1023730	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2208
Ga0110935_1025784	Not Available	2848
Ga0110935_1034145	Not Available	543
Ga0110935_1044577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	851
Ga0110935_1054482	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → Tenacibaculum finnmarkense	616
Ga0110935_1059077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	902
Ga0110935_1069657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → Rhodoferax koreense	876
Ga0110935_1078082	Not Available	653
Ga0110935_1078847	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	540
Ga0110935_1087422	Not Available	1166
Ga0110935_1092294	All Organisms → cellular organisms → Bacteria	2020
Ga0110935_1094560	Not Available	602
Ga0110935_1121739	Not Available	584
Ga0110935_1134360	Not Available	570
Ga0110935_1142842	Not Available	677
Ga0110935_1150406	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	727

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0110935_1001339	Ga0110935_10013398	F040153	MSCPSSNIVGGCDFTQFLVDQTPYFDELIVEDIRPTDGWLYNVSTGSTELGTPTEITQDRFRSVWPNTTKKWDRVVANGVGCTGNPCDPPEYQIGWGADRITYYAEQQAWSTPLLCYDQEMHITKAKEHLDQIISEVLRPATTAISSNFLRKRALQWAKRKWQCNKNMSAFTYTWTVVNTNEEVYFDCSCHPDQTYKLVPQMLQSRFEPLMRLGYAGKNPFADTAPFIELVTDIATCWELDRLGGQTGVGGTPSVSGNWRFEQWGSTNAYWRYGFSGQIGNFMVRTDPLGLRFNYVTDLGAGAGANRYRYQVVLPYKNSVTSGAGGAAGIGSDENVDFDKAHFTLTYIMHKKGMELLTPNATPINPEMPFGHRDFGGKWKFAMHDLGEDSTGKAISNKWENKGQFIAWFKYYVRPLHPEFMEVFFHKREPMCIPEINTCSADPGYPAQVYSSQNTTC*
Ga0110935_1001433	Ga0110935_10014332	F002371	MVNSKRKLKETRGGARINAGAKPKYNEQTKTVAFRCPLSKVDELKLIVKSKLSEWSVK*
Ga0110935_1001435	Ga0110935_10014351	F002371	MKLRPKKKKETRGGARINAGAKPKYNEQTKTVAFRCPLSKVDELKLIVKSKLSEWSVK*
Ga0110935_1001961	Ga0110935_10019611	F010914	MIYKILIEQNGKFIDLGETIECEFEQTQEIIDALQLEHGCCCALEAVSE*
Ga0110935_1002100	Ga0110935_10021001	F004010	VSANYMPLGKNVSKNIRELYADNKKKGKAKGFNGKPRSRKQIIAIGLSAAGKSKKK*
Ga0110935_1002820	Ga0110935_10028204	F018007	MFNGWKITNILDVGRCELDTADGPYNKTGYRLEHREDGFAITVGLMEYISGWSALEILYWLNEKQAIPRRYDNARRH*
Ga0110935_1004094	Ga0110935_10040941	F078624	DDGQGWAVDVFDGRRAWTKTHLGESPLNKAEAHRLAHKLRDPKFYTARTKPAVNSGGAL*
Ga0110935_1005513	Ga0110935_10055132	F082719	MSRQSDYISEARAANRKVWDGINALKSLQREYNALDYGNTLPDGSGENEGISKAEVGAVVFDTANALVTLLDAGHATNMAKLL*
Ga0110935_1009834	Ga0110935_10098345	F029893	MQDSVSVAANSVSANVVAGQLYEFVPTGTKVTLSCTGSNTGLRATLIANIPVMNDQAINLQNRFPIIPDDIVFQGAVRACRIVLTARNTTAGALTFFWRIDVN*
Ga0110935_1011158	Ga0110935_10111582	F009686	TEQEMFEASFKRPKNYFKLSAQEQWAIDKNLGILDWEGGNLTKEELARFRAHYKEN*
Ga0110935_1014426	Ga0110935_10144269	F078696	LNIQPSDAWQLTPKLFWSLWDMHLDKMEQSTGKAYTRPMRKTEFEELNDFLDSIHGNN*
Ga0110935_1015290	Ga0110935_10152902	F064603	MTIKKFDYSKSTEDIFYKIIYPLYAREFMFGNNYEQFAFLVESNFILNAPQWEYILEHWEQKESILIIETK*
Ga0110935_1019960	Ga0110935_10199601	F002371	MKKKKETRGGARQGSGAKPKYNEETKTVAFRCPLSKVDELKLIVKSKLSEWSVK*
Ga0110935_1020892	Ga0110935_10208922	F023098	MEERRQNWTCEAHHELVTSLRDINHKLDGMIERQIAYAETSARIEEKQESIERIVTNGLSHNVANISKRMDDFCVEVKRRLDQLEEFQWFRMPITQLRDSIFWYVLKIAFAGGVIYLILHYGKEIIQGTFK*
Ga0110935_1023730	Ga0110935_10237303	F052550	MNNKTTIDNNLRVYHVVTSTGKQWFCNIEDLNRIVNENELRAGYFKIYHFWNNKPERVSKKDLKLFFDGSQLKQGFVY*
Ga0110935_1025784	Ga0110935_10257845	F003622	MRSYKNELEAIANDLLTQNAEAKGNENKPNYSNRDFMNATIIFQTALMDKMYDNQDYDGMSMDDRMKMAESCGLALRKLIHTYTGLDTHKIEEFL*
Ga0110935_1034145	Ga0110935_10341453	F017991	MDKKQVKKIADTEVKAHEKKMHGMRKGGVTSIDMKKYGRNLARAMNQKASSK*
Ga0110935_1034187	Ga0110935_10341873	F103371	MSYDDWKTRNPDDDRCEFCGVHPRECRAGWQPNSCTGECGQSWRDPDYEYEKMRDEDR*
Ga0110935_1044577	Ga0110935_10445773	F087001	MGYPIIMNGDHAEFEREHVNTPPELRPDWPLPSFDARDWAKAFCARMAGGLVIDEELMTTWFANALMRGFDEHAARSAKDNA*
Ga0110935_1054482	Ga0110935_10544821	F013948	MREKFKKIVAYIFRSWEDEPEHTHPRLKILPPFLLELIAYLIALAILYQIGAYLWSII*
Ga0110935_1059077	Ga0110935_10590771	F085587	QCKWKVKIATNDNFQPVGLYHRDSSSRVNTLIEGSMKWALTTNNYHYDIDEEIFQTGGKQIYDYLKGLEDDLMTSFYTGMEDLMFGPGPSSPTQSPFTVASLLWWITATDDSLTENNSEEGFDGYAPVGWGSNGVGGIDPIVYDQWRNRTFPYTNVDRDDFVEKVISSMDLCSFEPPVKRPDIVDQTRHDWELLTTHSRLAACRRLLQLGNDNIGDDMAAHSGAVYIRGTPLNWVPAWTNSSSVNARTDGIVLGVNWSTFKAYYAAGRQMRKRKPFQHPEMSNVRVRAMDDSVQLVCFNR
Ga0110935_1069657	Ga0110935_10696572	F038145	MPWTPAQHRLFQAAAHNPQVARRVGIPQDKAKQMASEGVKPDPKRVAALLRKK*
Ga0110935_1078082	Ga0110935_10780821	F058173	MKMTYWLAIGVAVVVLVVAALMWGRYHPDPDVIGRLTDQIRLETIKQYDQRINELNIQLKTSQAAYIESQKRYDTIIKKIKELKDGKDAIKPPADSTELTARFNNL
Ga0110935_1078847	Ga0110935_10788471	F015419	MIDRNTNVQITDEAGNIRQYIVSRSSSSEDKSLNDFILEALQISEDKRKIPLKTQCPNGLEVYPSIKMKFENYGSPLLGDKLEAMMITWRD*
Ga0110935_1087422	Ga0110935_10874222	F024972	VKITKVTKTYFETEGERVYFFEPLDEEMTITELQELMDENEKFLLKEIQKMKKEVITESSVIYKEEKK*
Ga0110935_1092294	Ga0110935_10922942	F064659	MVEIVRETMQVNTMLLDGKRIAYRSDNVFLVQVGKGRGSYKTRYSFRGNLPQACLYYMGINIGNGYKKRLICREFNKPVIARAFS*
Ga0110935_1094560	Ga0110935_10945601	F004339	PRVAAREARRIRPLGTPAPALWLFALGLGVVLPVLLP*
Ga0110935_1121739	Ga0110935_11217391	F024972	MKMKIVKVTKEYFETEGERVYFFEPLDEDMTVSELQELMDENEKFILNEIH
Ga0110935_1127568	Ga0110935_11275682	F071737	MILTREISIKINETNYSYYEELGYEVVIDEKLIIPIELLSTGSHQKISCKCDGCDIIKDVIFKNYIKYGNKWGQYYCRK
Ga0110935_1134360	Ga0110935_11343601	F082705	TTVMATKKTTDEAVKELFDLVQSKKLAIEKAEKPCWETGGNFGYSANSAHDRTDIKTVLDVRKIVDMYAFLLDRKEKSEKAAEELSVTYNFKWLGFTIDEWKNDFQTRVNQISIQEKRKELNEIESRLNAIISPELKAQMELDALTTLLNKQ*
Ga0110935_1142842	Ga0110935_11428421	F024268	MAIAELYTGTEAISTTEHSVTTDTSGPDADTTDGVFQAFLDVSDMIAGDQLQIRVYEKVRSGDTQRIVYQAILTGAQSEPIWVSPSLVLLHGWDVTCDALAGTITVNWSIRQVA*
Ga0110935_1150406	Ga0110935_11504061	F052550	MKQIQYKLRVYHVVTSTGKQWFCNIEDLNRIVKENELRAGYFKIYHFWNNKAERVSKKDLKTFFEGSQLTQEFIY*