Metagenome Family F087001

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087001
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	77 residues
Representative Sequence	MRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATG
Number of Associated Samples	101
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.45 %
% of genes near scaffold ends (potentially truncated)	34.55 %
% of genes from short scaffolds (< 2000 bps)	70.91 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (87.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.455 % of family members)
Environment Ontology (ENVO)	Unclassified (28.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.364 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.00% β-sheet: 0.00% Coil/Unstructured: 54.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01844	HNH	1.82
PF05838	Glyco_hydro_108	1.82
PF04466	Terminase_3	0.91
PF00476	DNA_pol_A	0.91
PF14359	DUF4406	0.91
PF05063	MT-A70	0.91
PF12684	DUF3799	0.91
PF04448	DUF551	0.91
PF01833	TIG	0.91
PF00589	Phage_integrase	0.91
PF13588	HSDR_N_2	0.91
PF13385	Laminin_G_3	0.91
PF09397	FtsK_gamma	0.91
PF00805	Pentapeptide	0.91
PF13545	HTH_Crp_2	0.91
PF12651	RHH_3	0.91
PF07120	DUF1376	0.91
PF03167	UDG	0.91
PF01520	Amidase_3	0.91
PF10544	T5orf172	0.91
PF10908	DUF2778	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3926	Lysozyme family protein	General function prediction only [R]	1.82
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	1.82
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.91
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	0.91
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.91
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.91
COG1783	Phage terminase large subunit	Mobilome: prophages, transposons [X]	0.91
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.91
COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.73 %
Unclassified	root	N/A	7.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.27 %
Unclassified	root	N/A	7.27 %
Viruses	superkingdom	All Organisms → Viruses	5.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.27 %
Unclassified	root	N/A	7.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.45 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	73.64 %
Unclassified	root	N/A	7.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57.27 %
Unclassified	root	N/A	7.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.45 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.82 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.91 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	44.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.09 %
Unclassified	root	N/A	7.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.45 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.64 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.91 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	44.55 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.27 %
Unclassified	root	N/A	7.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.45 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.73 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.91 %
Desulfurellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales	0.91 %
Alteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	0.91 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Rhodovarius	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius	44.55 %
Unclassified	root	N/A	7.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.55 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.73 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.91 %
unclassified Desulfurellales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales	0.91 %
Alteromonas/Salinimonas group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group	0.91 %
Phyllobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Rhodovarius crocodyli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	44.55 %
Unclassified	root	N/A	7.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.45 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.73 %
Desulfurellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	0.91 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.91 %
Alteromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas	0.91 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.91 %
Phyllobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Rhodovarius crocodyli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	44.55 %
Unclassified	root	N/A	7.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.45 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.73 %
Alteromonas australica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica	0.91 %
Desulfurellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	0.91 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.91 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.91 %
Phyllobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000731\|JGI12381J11899_1002875	Not Available	1373	Open in IMG/M
3300003323\|rootH1_10200999	All Organisms → cellular organisms → Bacteria	4324	Open in IMG/M
3300003323\|rootH1_10227299	All Organisms → cellular organisms → Bacteria	4290	Open in IMG/M
3300005093\|Ga0062594_100845059	Not Available	854	Open in IMG/M
3300005260\|Ga0074072_1045525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1326	Open in IMG/M
3300005338\|Ga0068868_100425603	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1150	Open in IMG/M
3300005340\|Ga0070689_100748319	Not Available	856	Open in IMG/M
3300005526\|Ga0073909_10050426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1508	Open in IMG/M
3300005544\|Ga0070686_101896055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	509	Open in IMG/M
3300005614\|Ga0068856_100405279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1383	Open in IMG/M
3300005614\|Ga0068856_100434095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica	1333	Open in IMG/M
3300005618\|Ga0068864_100000327	All Organisms → cellular organisms → Bacteria	41915	Open in IMG/M
3300005764\|Ga0066903_107177737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	577	Open in IMG/M
3300005844\|Ga0068862_100199369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1804	Open in IMG/M
3300006755\|Ga0079222_10664485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	814	Open in IMG/M
3300006805\|Ga0075464_10049606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	2311	Open in IMG/M
3300008065\|Ga0110935_1044577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	851	Open in IMG/M
3300009177\|Ga0105248_10105684	All Organisms → Viruses → Predicted Viral	3174	Open in IMG/M
3300009826\|Ga0123355_10897103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	964	Open in IMG/M
3300010036\|Ga0126305_10830462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	629	Open in IMG/M
3300010045\|Ga0126311_10116826	Not Available	1855	Open in IMG/M
3300010166\|Ga0126306_10230370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1408	Open in IMG/M
3300010233\|Ga0136235_1033613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1027	Open in IMG/M
3300010371\|Ga0134125_10790537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1044	Open in IMG/M
3300010398\|Ga0126383_12885516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	561	Open in IMG/M
3300011438\|Ga0137451_1227381	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300012096\|Ga0137389_10000428	All Organisms → cellular organisms → Bacteria	22858	Open in IMG/M
3300012362\|Ga0137361_10630355	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300012971\|Ga0126369_10045693	All Organisms → Viruses → Predicted Viral	3708	Open in IMG/M
3300014205\|Ga0172380_10077226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2743	Open in IMG/M
3300014501\|Ga0182024_10003337	All Organisms → cellular organisms → Bacteria	38397	Open in IMG/M
3300015050\|Ga0181338_1000039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	41569	Open in IMG/M
3300015242\|Ga0137412_11240609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	522	Open in IMG/M
3300015371\|Ga0132258_10108544	Not Available	6562	Open in IMG/M
3300015373\|Ga0132257_102832894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	632	Open in IMG/M
3300016294\|Ga0182041_10021247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	3973	Open in IMG/M
3300016294\|Ga0182041_12144348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	522	Open in IMG/M
3300016341\|Ga0182035_10454232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1087	Open in IMG/M
3300016357\|Ga0182032_10071641	All Organisms → cellular organisms → Bacteria	2345	Open in IMG/M
3300016445\|Ga0182038_10051102	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	2760	Open in IMG/M
3300016445\|Ga0182038_12008004	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300017970\|Ga0187783_10293489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1186	Open in IMG/M
3300020021\|Ga0193726_1043349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	2174	Open in IMG/M
3300020215\|Ga0196963_10574350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	514	Open in IMG/M
3300021432\|Ga0210384_11059951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	713	Open in IMG/M
3300021475\|Ga0210392_10324627	Not Available	1108	Open in IMG/M
3300021478\|Ga0210402_11310935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	651	Open in IMG/M
3300024179\|Ga0247695_1014317	All Organisms → Viruses → Predicted Viral	1113	Open in IMG/M
3300024232\|Ga0247664_1088883	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300024249\|Ga0247676_1006970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1698	Open in IMG/M
3300024251\|Ga0247679_1018373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1189	Open in IMG/M
3300024254\|Ga0247661_1005716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1988	Open in IMG/M
3300024287\|Ga0247690_1000768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5974	Open in IMG/M
3300025896\|Ga0208916_10089969	All Organisms → Viruses → Predicted Viral	1291	Open in IMG/M
3300025915\|Ga0207693_10217930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1500	Open in IMG/M
3300025935\|Ga0207709_10078491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	2119	Open in IMG/M
3300025941\|Ga0207711_10696702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	947	Open in IMG/M
3300026023\|Ga0207677_10536470	Not Available	1017	Open in IMG/M
3300026078\|Ga0207702_10365087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1385	Open in IMG/M
3300026088\|Ga0207641_11411303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	697	Open in IMG/M
3300026095\|Ga0207676_11915469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	591	Open in IMG/M
3300026481\|Ga0257155_1000001	All Organisms → cellular organisms → Bacteria	49808	Open in IMG/M
3300026800\|Ga0207742_100858	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	3249	Open in IMG/M
3300026809\|Ga0207820_106116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	998	Open in IMG/M
3300026830\|Ga0207861_106414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	791	Open in IMG/M
3300026849\|Ga0207804_102394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1950	Open in IMG/M
3300026862\|Ga0207724_1001644	All Organisms → cellular organisms → Bacteria → Proteobacteria	2269	Open in IMG/M
3300026868\|Ga0207818_1002174	All Organisms → cellular organisms → Bacteria → Proteobacteria	1940	Open in IMG/M
3300026921\|Ga0207860_1005012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1937	Open in IMG/M
3300027000\|Ga0207803_1001177	All Organisms → cellular organisms → Bacteria → Proteobacteria	4287	Open in IMG/M
3300027035\|Ga0207776_1049699	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300027173\|Ga0208097_1000971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2416	Open in IMG/M
3300027821\|Ga0209811_10060028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1315	Open in IMG/M
3300027875\|Ga0209283_10757311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	601	Open in IMG/M
3300028380\|Ga0268265_11019167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	818	Open in IMG/M
3300030520\|Ga0311372_10375270	All Organisms → Viruses → Predicted Viral	2176	Open in IMG/M
3300031543\|Ga0318516_10274269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	975	Open in IMG/M
3300031543\|Ga0318516_10671038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	589	Open in IMG/M
3300031544\|Ga0318534_10026331	All Organisms → cellular organisms → Bacteria → Proteobacteria	3138	Open in IMG/M
3300031545\|Ga0318541_10109980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1487	Open in IMG/M
3300031546\|Ga0318538_10022617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2828	Open in IMG/M
3300031573\|Ga0310915_10211420	All Organisms → cellular organisms → Bacteria → Proteobacteria	1358	Open in IMG/M
3300031719\|Ga0306917_11372780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	545	Open in IMG/M
3300031744\|Ga0306918_10045752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2876	Open in IMG/M
3300031798\|Ga0318523_10146328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1174	Open in IMG/M
3300031833\|Ga0310917_10027689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	3322	Open in IMG/M
3300031833\|Ga0310917_10260798	All Organisms → cellular organisms → Bacteria → Proteobacteria	1168	Open in IMG/M
3300031860\|Ga0318495_10357074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	647	Open in IMG/M
3300031879\|Ga0306919_10966496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	652	Open in IMG/M
3300031890\|Ga0306925_11661171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	618	Open in IMG/M
3300031910\|Ga0306923_10170825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2483	Open in IMG/M
3300031910\|Ga0306923_12569105	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300031942\|Ga0310916_10429745	All Organisms → cellular organisms → Bacteria → Proteobacteria	1124	Open in IMG/M
3300031945\|Ga0310913_10303912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1125	Open in IMG/M
3300031947\|Ga0310909_11507417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	535	Open in IMG/M
3300032009\|Ga0318563_10172787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1162	Open in IMG/M
3300032059\|Ga0318533_11221868	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300032063\|Ga0318504_10189371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	958	Open in IMG/M
3300032067\|Ga0318524_10682354	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300032091\|Ga0318577_10433135	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300032261\|Ga0306920_102321909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	742	Open in IMG/M
3300032829\|Ga0335070_12042727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	515	Open in IMG/M
3300032893\|Ga0335069_10022242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8744	Open in IMG/M
3300032893\|Ga0335069_10045472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5813	Open in IMG/M
3300032893\|Ga0335069_12635465	Not Available	518	Open in IMG/M
3300032954\|Ga0335083_10224605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	1698	Open in IMG/M
3300032955\|Ga0335076_10041497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovarius → Rhodovarius crocodyli	4593	Open in IMG/M
3300033475\|Ga0310811_10529050	All Organisms → Viruses → Predicted Viral	1220	Open in IMG/M
3300034149\|Ga0364929_0000200	All Organisms → cellular organisms → Bacteria	11461	Open in IMG/M
3300034191\|Ga0373909_0198389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium	633	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.91%
Host-Associated	Host-Associated	16.36%
Engineered	Engineered	2.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.36%
Plants	Host-Associated → Plants	15.45%
Aquatic	Environmental → Aquatic	4.55%
Arthropoda	Host-Associated → Arthropoda	0.91%
Solid Waste	Engineered → Solid Waste	0.91%
Wastewater	Engineered → Wastewater	0.91%
Bioremediation	Engineered → Bioremediation	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.73%
Freshwater	Environmental → Aquatic → Freshwater	1.82%
Marine	Environmental → Aquatic → Marine	1.82%
Rhizome	Host-Associated → Plants → Rhizome	1.82%
Sediment	Environmental → Aquatic → Sediment	0.91%
Peat	Environmental → Terrestrial → Peat	0.91%
Floodplain	Environmental → Terrestrial → Floodplain	0.91%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.91%
Landfill	Engineered → Solid Waste → Landfill	0.91%
Unclassified	Engineered → Wastewater → Unclassified	0.91%
Metal	Engineered → Bioremediation → Metal	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.73%
Loam	Environmental → Terrestrial → Soil → Loam	13.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.73%
Coastal	Environmental → Aquatic → Marine → Coastal	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	1.82%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.91%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Sand	Environmental → Terrestrial → Soil → Sand	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.91%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.91%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.09%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.91%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.91%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.91%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Unclassified → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.64%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.73%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.91%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.91%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.91%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.91%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	0.91%
Wastewater	Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater	0.91%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000731	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34	Environmental	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300008065	Wastewater microbial communities from the domestic sewers in Singapore - Site 3	Engineered	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010233	Filterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA.	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014205	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG	Engineered	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015050	Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020215	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300024249	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300024287	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK31	Environmental	Open in IMG/M
3300025896	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026800	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 43 (SPAdes)	Environmental	Open in IMG/M
3300026809	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 47 (SPAdes)	Environmental	Open in IMG/M
3300026830	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 33 (SPAdes)	Environmental	Open in IMG/M
3300026849	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46 (SPAdes)	Environmental	Open in IMG/M
3300026862	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 31 (SPAdes)	Environmental	Open in IMG/M
3300026868	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 32 (SPAdes)	Environmental	Open in IMG/M
3300026921	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 28 (SPAdes)	Environmental	Open in IMG/M
3300027000	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41 (SPAdes)	Environmental	Open in IMG/M
3300027035	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034191	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.1	Engineered	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12381J11899_10028752	3300000731	Tropical Forest Soil	MMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD*
rootH1_102009996	3300003323	Sugarcane Root And Bulk Soil	VHIHNGDHAAFEIEHANTPPEQRPDWPLPSFDAQDWAKAFCKLNPSADYELMLAWFANALMRGYDEGRSRATVGDEHADRT*
rootH1_102272996	3300003323	Sugarcane Root And Bulk Soil	MPYPIILNGDHAEFEAEHANTKPEDRPDWPLPSFDARDWAAAFCKLNPSMDEGLMITWFANALQRGFDEAVSRARPYL*
Ga0062594_1008450592	3300005093	Soil	MRYPIILNGDHAEFENEHADTPPKERPDWPLPSFDARDWAEAFCKRNPGVDEGLMIAWFANALMRGYDEAQARAVAIP*
Ga0074072_10455252	3300005260	Soil	MPYPIIMNGDHAEFEREHASTKPEDRPDWPLPSFDARDWAKAFCKLNPQMDEGTMIAWFANALMRGYDEPRRA*
Ga0068868_1004256031	3300005338	Miscanthus Rhizosphere	HNGDHAEFERANVNTKPEDRADWPLPSFDARDWAKAFVKMHGGDEGLMQTWFANALMRGYDERSKHP*
Ga0070689_1007483191	3300005340	Switchgrass Rhizosphere	MRYPIILNGDHAEFENEHADTPPKERPDWPLPSFDARDWAEAFCKRNPGVDEGLMIAWFANALMRGYDEAQ
Ga0073909_100504262	3300005526	Surface Soil	MRYPIILNGDHAQFEIDHVNTPPKERPDWPLPSFDARDWAHAFCKLNPGMDEELMISWFANALMRGYDEHESRVRDVL*
Ga0070686_1018960551	3300005544	Switchgrass Rhizosphere	VKERKMRYPIILNGDHAEFENEHADTPPKERPDWPLPSFDARDWAEAFCKRNPGVDEGLMIAWFANALMRGYDEAQARAVAIP*
Ga0068856_1004052792	3300005614	Corn Rhizosphere	MNKIIYNGDHLEYELENQNTPPEERSDWPLPSFNAVDWAKAFCKHFPQIDEGLMIAWFANALQRGFDEAIIRKGEESGI*
Ga0068856_1004340952	3300005614	Corn Rhizosphere	MTYPILNGDHAAFEREHANTKPEDRPDWPIPSFDARDWAKAFCKINPGVDEDIMVMWFANALMRGWDERGNKQK*
Ga0068864_10000032746	3300005618	Switchgrass Rhizosphere	MIIHNGDHAEFERANVNTKPEDRADWPLPSFDARDWAKAFVKMHGGDEGLMQVWFANALMRGYDERSKRS*
Ga0066903_1071777372	3300005764	Tropical Forest Soil	MTIILCGDQLEFEQEYAGMPPRERPDWPLPSFDAKDWAEAFCKLNPNMDEDTMITWFASAIMRGYDEA
Ga0068862_1001993691	3300005844	Switchgrass Rhizosphere	MQIMNGDHAQFEIDHANTKPEDRPDWPLPSFDARDWAAAFCKINPQMDEGTMIAWFANALMRGYDQANHEMLEQIKPHSPT*
Ga0079222_106644852	3300006755	Agricultural Soil	MRYPVIFNGDHAEFEREHANTPPEERPDWPLPSFDARDWAQAFCKLNPTIDEGVMIAWFANALMRGYDERAAFVSDTSKE*
Ga0075464_100496066	3300006805	Aqueous	MTKRYPIILNGDHAEFEREHANTPPHERPDWPLPSFDAGDWAAAFVAKNPDCGVSEELMLVWFANALMRGYDEHAARAARDERRDA*
Ga0110935_10445773	3300008065	Wastewater	MGYPIIMNGDHAEFEREHVNTPPELRPDWPLPSFDARDWAKAFCARMAGGLVIDEELMTTWFANALMRGFDEHAARSAKDNA*
Ga0105248_101056843	3300009177	Switchgrass Rhizosphere	MNGDQAAFEIEHANTKPEDRPDWPLPSFDARDWAKAFVKMHGGDEGLMQVWFANALMRGYDEQKKEIL*
Ga0123355_108971031	3300009826	Termite Gut	MPYPVILNGDHAEFEREYANVPPHERPDWPLPSFDARDWAEAFCKRNPSVEFDVALTWFANALMRGYDEPRI*
Ga0126305_108304621	3300010036	Serpentine Soil	GDDRLTKGKAMRIHNGDHAEFEIEHANTLPKERPDWPLPSFDAKDWAESFMQHFGHRKDDIDEELMTGWFANALMRGYDEIR*
Ga0126311_101168262	3300010045	Serpentine Soil	MPYPGPMNGDRLEFEIEHENTPLKDRPDWPLPSFDARDWAEAFVERANLDPAFATDKGIMIGWFANALMRGYDEGVQAGCAGEASTGSRP*
Ga0126306_102303703	3300010166	Serpentine Soil	MRYPVFLCGDQIEFEAEWEGKDPKSRPDWPFPSFNAWDWAEAFCKVQPDVDQGLMISWFANALMRGYDQGQVDSHSSSL*
Ga0136235_10336131	3300010233	Freshwater	MSNHERYPVILSGDHAEFEQEWAASGRPKEERPDWPLPSFDARDWAKAFLKINPDCGLAEDVMIGWFANALMRGFD
Ga0134125_107905373	3300010371	Terrestrial Soil	MNMAYPIILGGDHAEFEQEWAASGRPDNERPDWPLPSFDARDWAKAFCKLNPSMDEELMVTWFANALMRGYDERTAQELRE*
Ga0126383_128855162	3300010398	Tropical Forest Soil	MIIHNGDHLEFEIEHANTPPRERSDWPLPSFDARDWAEAFCKHNPGIDEDIMIGWFANALMRGLDEGFVRAKAQKD*
Ga0137451_12273811	3300011438	Soil	VIIHNGDHAAFEVEHANTKPEDRPDWPLPSFDARDWARAFVKLHGGDEGLMQAWFANALMRGYDEGCK*
Ga0137389_100004285	3300012096	Vadose Zone Soil	LNGDHAEFELEHANTPLKDRPDWPLPSFDARDWAEAFNEMLVRKGHQPFDPGLLITWFANALMRGYDEARK*
Ga0137361_106303552	3300012362	Vadose Zone Soil	MTTYPVIFNGDHAEFECKYANTPAHERPDWPLPSFDARDWAAAFLKINPHCGIDDGTMIAWFANALMRGFDEHARRQADEAAE*
Ga0126369_1004569310	3300012971	Tropical Forest Soil	VILCGDQLEFEQEHANTPPKERPDWPLPSFDAKDWAEAFCKLNPTMDEGLMITWFANALMRGYDEAMSRVANGKT*
Ga0172380_100772263	3300014205	Landfill Leachate	MLILNGDQAEFEREHANTKPKDRPDWPLPSFDARDWAKAFCDARARHGWEADEEIMTTWFANALMRGYDEHASRVHDDD*
Ga0182024_1000333728	3300014501	Permafrost	MSEHTGYPVILNGDHAEFEREWAASGRPPQERPDWPLPSFDARDWAQAFLKINTDCGISEDVMVGWFANALMRGYDQPRA*
Ga0181338_100003934	3300015050	Freshwater Lake	MAYPIILNGDHAEFEREHANTPPHERPDWPLPSFDARDWAKAFCVARKKHGWDADEEIMTTWFANALMRGYDEHASLSRGEND*
Ga0137412_112406092	3300015242	Vadose Zone Soil	MPYPVILNGDHAEFEQEWAGKPAKERPDWPLPSFDARDWAEAFCKINPAMTEDIMIGWFANALMRGYDEHVKRAADAAE*
Ga0132258_101085449	3300015371	Arabidopsis Rhizosphere	MTVILCGDQLEFELEHIDIPPKERPDWPYPSFDAKDWAAAFCKRNPTMDEGLMLAWFANALMRGYDEGLTRISRSMKHNGN*
Ga0132257_1028328942	3300015373	Arabidopsis Rhizosphere	MTVILCGDQLEFELEHIDIPPKERPDWPYPSFDAKDWAAAFCKRNPTMDEGLMLAWFANALMRGYDEGLTRISRSIKHNGN*
Ga0182041_100212478	3300016294	Soil	RRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMITWFANALMRGYDHAKATGDTD
Ga0182041_121443482	3300016294	Soil	MPVILCGDQIEFEREHANTPPKERPDWPMPSFDADDWAEAFCKFNPSVDKGLMLTWFASALMRGFDEGWARAGR
Ga0182035_104542321	3300016341	Soil	MMRRTLNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMITWFANALMRGYDHAKATGDTD
Ga0182032_100716411	3300016357	Soil	MRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGD
Ga0182038_100511028	3300016445	Soil	GDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKRNPQMEEDVMLAWFANALMRGYDERK
Ga0182038_120080042	3300016445	Soil	MRRILNGDHLHVEIDHKATPLKARPDWPLSSFDAQHWAEAFCKIHPSMDKDDMIGWFANALMCGYDH
Ga0187783_102934893	3300017970	Tropical Peatland	MTTARYPIILNGDHAEFEIEHENTPPEERPDWPLPSFDARDWAKAFLKRNPNCGLDEDTMIGWFANALMRGYDEPRS
Ga0193726_10433492	3300020021	Soil	VNYPVILCGDQLEFEAQHANTPPEQRPDWPLPSFDARDWAKAFCKINPDGPPEDVMISWFANALMRGYDEATSRRTP
Ga0196963_105743501	3300020215	Soil	MPYPIILNGDHAEFEQQHADTPPHERPDWPLPSFDARDWAAAFCKLNPGMDEGTMIAWFANALMRGYDEGCSRELTD
Ga0210384_110599512	3300021432	Soil	MTGYPIIFNGDHAEFEAEHANTPPHERPDWPLPSFDARDWAQAFLKINPNCSLDEGTMISWFANALMRGYDQKTVEYEGTRTSARG
Ga0210392_103246272	3300021475	Soil	MIYPGPINGDRLQFELDYANVPPKERPDWPLPSFDARDWAEAFCKINPSMDEGVMTSWFANALMRGYDEAMWRINRLEASGSKEAEV
Ga0210402_113109352	3300021478	Soil	MIYPGPINGDRLQFELDYANVPPKERPDWPLPSFDSRDWAEAFCKINPSMDEGVMISWFANALMRGYDEAMWRINRLEASRSKEAEV
Ga0247695_10143171	3300024179	Soil	MPMKILNGDHAEFEREHMFTKPEDRPDWPLPSFDARDWAKAFVKLHGGDEELMTSWFANALMRGYDEQSRKGN
Ga0247664_10888831	3300024232	Soil	MIIHNGDHAEFERANVNTKPEDRADWPLPSFDARDWAKAFVKMHGGDEGLMQTWFANAL
Ga0247676_10069703	3300024249	Soil	MIIHNGDHLEFEIEHANTPPKERPDWPLPSFDARDWARAFLEAYEKADDGFLCEETMITWFASALMRGWDEHGSR
Ga0247679_10183734	3300024251	Soil	MAYPIILNGDHAEFEAEHANMKPEDRPDWPLPSFDARDWAAAFCKRHPTMDEGTMISWFANALMRGYDERAARSADAA
Ga0247661_10057163	3300024254	Soil	MIIHNGDHLEFEIEHANTPPKERPDWPLPSFDARDWARAFLEAYEKADDGFLCEETMIAWFASALMRGWDEHGSRLAATRRGQG
Ga0247690_10007682	3300024287	Soil	MGYPVIMNGDHAEFERDHANTPPKERPDWPLPSFDARDWAEAFCKLNPSMDEGLMIGWFANALMRGFDEHAARSAPGGGTGG
Ga0208916_100899694	3300025896	Aqueous	MTKRYPIILNGDHAEFEREHANTPPHERPDWPLPSFDAGDWAAAFVAKNPDCGVSEELMLVWFANALMRGYDEHAARAARDERRDA
Ga0207693_102179301	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSGYPVIINGDHAEFEKEWGGRDPKDRPDWPLPSFDAVDWAEAFMKTCGDRRHEIDRDLMIGWFANALMRGYDHPRSDA
Ga0207709_100784911	3300025935	Miscanthus Rhizosphere	MIIHNGDHAEFERANVNTKPEDRADWPLPSFDARDWAKAFVKMHGGDEGLMQVWFA
Ga0207711_106967022	3300025941	Switchgrass Rhizosphere	MNGDQAAFEIEHANTKPEDRPDWPLPSFDARDWAKAFVKMHGGDEGLMQVWFANALMRGYDEQKKEIL
Ga0207677_105364702	3300026023	Miscanthus Rhizosphere	MNKIIYNGDHLEYELENQNTPPEERSDWPLPSFNAVDWAKAFCKHFPQIDEGLMIAWFANALQRGFDEAIIRKGEESGI
Ga0207702_103650872	3300026078	Corn Rhizosphere	MTYPILNGDHAAFEREHANTKPEDRPDWPIPSFDARDWAKAFCKINPGVDEDIMVMWFANALMRGWDERGNKQK
Ga0207641_114113031	3300026088	Switchgrass Rhizosphere	MIIHNGDHAEFERANVNTKPEDRADWPLPSFDARDWAKAFVKMHGGDEGLMQVWFANALMRGY
Ga0207676_119154692	3300026095	Switchgrass Rhizosphere	MIIHNGDHAEFERANVNTKPEDRADWPLPSFDARDWAKAFVKMHGGDEGLMQTWFANALMRGYDERSKHP
Ga0257155_100000115	3300026481	Soil	MPYPVILNGDHAEFEREHADTPLEERPDWPLTSFDARDWAKAFCKRWPGVDEATMITWFASALMRGYDEARSRQ
Ga0207742_1008585	3300026800	Tropical Forest Soil	MMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0207820_1061163	3300026809	Tropical Forest Soil	MRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0207861_1064141	3300026830	Tropical Forest Soil	RRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0207804_1023946	3300026849	Tropical Forest Soil	PADGVVMMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDPRDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0207724_10016443	3300026862	Tropical Forest Soil	MGEGQRGCCCRSASADGVVMMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0207818_10021743	3300026868	Tropical Forest Soil	MRRTLNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0207860_10050121	3300026921	Tropical Forest Soil	SADGVVMMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0207803_10011776	3300027000	Tropical Forest Soil	MGQGQRGRRCRSAPADGVVMMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0207776_10496991	3300027035	Tropical Forest Soil	MMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALM
Ga0208097_10009713	3300027173	Forest Soil	MHYPIIMNGDHAEFEREHANTPPHERPDWPLPSFDARDWAVAFCKLNPAIDENLMITWFANALMRGYDEATSRLANAGQA
Ga0209811_100600281	3300027821	Surface Soil	MRYPIILNGDHAQFEIDHVNTPPKERPDWPLPSFDARDWAHAFCKLNPGMDEELMISWFANALM
Ga0209283_107573112	3300027875	Vadose Zone Soil	MGYPIILNGDHAEFELEHANTPLKDRPDWPLPSFDARDWAEAFNEMLVRKGHQPFDPGLLITWFANALMRGYDEARK
Ga0268265_110191671	3300028380	Switchgrass Rhizosphere	MQIMNGDHAQFEIDHANTKPEDRPDWPLPSFDARDWAAAFCKINPQMDEGTMIAWFANALMRGYDQANHEMLEQIKPHSPT
Ga0311372_103752702	3300030520	Palsa	VSGYPIILNGDHAEYERDNADVPPKDRPDWPLPSFDARDWAQAFCKLNPAIDEGLMIAWFANALMRGYDERGSQ
Ga0318516_102742692	3300031543	Soil	MPVILCGDQIEFEREHANTPPKERPDWPMPSFDADDWAEAFCKFNPSVDKGLMLTWFASALMRGFDEGWARAGRNARATPGGTDAVR
Ga0318516_106710382	3300031543	Soil	MMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMITWFANALMRGYDHAKATGDTD
Ga0318534_100263316	3300031544	Soil	MRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMITWFANALMRGYDHAKATGDTD
Ga0318541_101099805	3300031545	Soil	MRRILNGDHLQFEIDHKDTPLKERPDWPLSSFDAQDWAEVFCKIHPSMDKDDMIGWFANALMCGYDHAKATGDTD
Ga0318538_100226171	3300031546	Soil	RRCRSAPADGVVMMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0310915_102114203	3300031573	Soil	MGEGQRGRRCRSAPADGVVLMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0306917_113727801	3300031719	Soil	MDTSRAEMGEGQRGRRCRSAPADGVVLMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMITWFANALMRGYDHAKATGDTD
Ga0306918_100457521	3300031744	Soil	VLMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMITWFANALMRGYDHAKATGDTD
Ga0318523_101463285	3300031798	Soil	EIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0310917_100276896	3300031833	Soil	GGHSASADGVVMMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMITWFANALMRGYDHAKATGDTD
Ga0310917_102607984	3300031833	Soil	MRRILNGDHLQFEIDHKDTPLKERPDWPLSSFDAQDWAEAFCKIHPSMDKDDMIGWFANALMCGYDHAKATGDTD
Ga0318495_103570743	3300031860	Soil	VMMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMITWFANALMRGYDHAKATGDTD
Ga0306919_109664961	3300031879	Soil	MRYPVILCGNQLEFEKEHENTPPEERPDWPLPSFDAVDWAKAFCKLYPQVDEETMVTWFAGALMRGYDEHVAETRR
Ga0306925_116611713	3300031890	Soil	ADGVVLMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMITWFANALMRGYDHAKATGDTD
Ga0306923_101708251	3300031910	Soil	MPVILCGDQIEFEREHANTPPKERPDWPMPSFDADDWAEAFCKFNPSVDKGLMLTWFASALMRGFDEGWARAGRNARATP
Ga0306923_125691052	3300031910	Soil	MMRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKRNPQMEEDVMLAWFANALMRGYDERK
Ga0310916_104297453	3300031942	Soil	MMRRTLNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0310913_103039121	3300031945	Soil	ILNGDHLQFEIDHKDTPLKERPDWPLSSFDAQDWAEVFCKIHPSMDKDDMIGWFANALMCGYDHAKATGDTD
Ga0310909_115074171	3300031947	Soil	LQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0318563_101727871	3300032009	Soil	GVVLMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATGDTD
Ga0318533_112218681	3300032059	Soil	MRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKRNPQMEEDVMLAWFANALMRGYDERK
Ga0318504_101893714	3300032063	Soil	AEMGQGQRCRRCRSAPADGVVMMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMITWFANALMRGYDHAKATGDTD
Ga0318524_106823542	3300032067	Soil	MRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMITWFANALM
Ga0318577_104331351	3300032091	Soil	MRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMIAWFANALMRGYDHAKATG
Ga0306920_1023219091	3300032261	Soil	LMRRILNGDHLQFEIDHKDTPLKERPDWPYPSFDARDWAEAFCKLNPSMDEGVMITWFANALMRGYDHAKATGDTD
Ga0335070_120427272	3300032829	Soil	DRGGARFVRKERTMPYPIIFNGDHAEFEIENANTPPKERADWPLPSFDARDWAEAFLKHNPNCGIDEGTLIGWFANALMRGYDEPRAA
Ga0335069_1002224212	3300032893	Soil	MPYPIIFNGDHAEFEIENANTPPKERADWPLPSFDARDWAEAFLKHNPNCGIDEGTLIGWFANALMRGYDEPRAA
Ga0335069_100454722	3300032893	Soil	MPTRILNGDHAEFEREHADTKPEDRPDWPLPSFDARDWAKAFCKRFPDMDEQVMVGWFANALMRGYDEQQHS
Ga0335069_126354653	3300032893	Soil	MILNGDHAQFEKDWANVRLEDRPDWPMPSFDARDWAKAFVRWHGGDEELMQAWFAS
Ga0335083_102246052	3300032954	Soil	MRYPVILNGDHAEFEAEWEGKDPKERPDWPLPSFDARDWAEAFCKQFPEVDEDTVRSWFASALMRGWDEHAARYPQGG
Ga0335076_1004149717	3300032955	Soil	MTEQRTSDRRVIHNGDHLEFELQHANAPPEQRPDWPLPSFDARDWAKAFCKLYPQIPEDIMVGWFASALMRGYDERAARE
Ga0310811_105290501	3300033475	Soil	MMAYPVIMNGDHAEFEREHGSTNPEDRPDWPLPSFDAQDWAKAFCKIHPQVEEDTMIGWFANALMRGFDEHASR
Ga0364929_0000200_4651_4860	3300034149	Sediment	VIIHNGDHAAFEVEHANTKPEDRPDWPMPSFDARDWARAFVKMHGGDEGLMLTWFASALMRGYDEGIKR
Ga0373909_0198389_222_467	3300034191	Sediment Slurry	MPYPIIFNGDHAEFELEHANTKPEERPDWPLPSFDARDWAAAFCKINPTMDEGTMITWFANALMRGYDEHASRTPQESDHD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087001

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences