3300008058: Human stool microbial communities from NIH, USA - visit 2, subject 159510762 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008058
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053096 | Ga0114167
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 159510762 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111563152
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042737	Metagenome / Metatranscriptome	157	Y
F074964	Metagenome	119	N
F084124	Metagenome	112	Y
F089053	Metagenome	109	Y
F089054	Metagenome	109	N
F090484	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114167_100112	All Organisms → Viruses	136139
Ga0114167_100150	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	111550
Ga0114167_102077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	8042
Ga0114167_102903	All Organisms → cellular organisms → Bacteria	5079
Ga0114167_106436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1522
Ga0114167_108424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1071
Ga0114167_113497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	627

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114167_100112	Ga0114167_1001122	F090484	MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIKDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISTQSLPNISITVGNDKELDGESVFKDIPLEELSFYSDTYLYPSSQYSSL*
Ga0114167_100150	Ga0114167_10015055	F042737	MKLTAKSSEVFDYVKSNGGHVSIDEICNAIGRASRSVGANVTDLQKKGLVEREKVEVEGTEKPVVYVNLTDAGTTFVPSDDAE*
Ga0114167_102077	Ga0114167_1020775	F084124	LNITALAFARATKENTLPFHGQRNALTVFLAFPVTMAIACFNKLSFSTQTTTLFAPEELLYRKILWALPKPASL*
Ga0114167_102903	Ga0114167_10290310	F089054	MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTYIRLKLREILKVNLTDITIIDIISLP*
Ga0114167_106436	Ga0114167_1064361	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANCADLKAICKALEIPAEYAVKVASLAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNVDKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESTQQ*
Ga0114167_108424	Ga0114167_1084241	F089053	LFAFGSRNGCVVDECRTVKGCIRKWLYIFANGQLKLSTAEEVNVKNMEVSL*
Ga0114167_113497	Ga0114167_1134971	F074964	NAVIKENASNLVGAVKLYNALFANCADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDNKVDKEKGIEAKAADWCSDNVVYGGEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*