3300007996: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765620695 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007996
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052939 | Ga0111052
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765620695 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 151884047
• Sequencing Scaffolds: 23
• Novel Protein Genes: 25
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	2
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F043990	Metagenome	155	N
F045567	Metagenome	152	N
F051212	Metagenome	144	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F061925	Metagenome	131	N
F067846	Metagenome	125	Y
F072446	Metagenome	121	N
F073671	Metagenome	120	N
F076191	Metagenome	118	N
F078842	Metagenome	116	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F089056	Metagenome	109	N
F092230	Metagenome	107	N
F094007	Metagenome	106	N
F097490	Metagenome	104	N
F099454	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111052_100193	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	58350
Ga0111052_100624	Not Available	27762
Ga0111052_101123	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	18258
Ga0111052_101155	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	17836
Ga0111052_101883	All Organisms → Viruses	12031
Ga0111052_103632	All Organisms → cellular organisms → Bacteria	6933
Ga0111052_104151	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	6142
Ga0111052_105542	Not Available	4749
Ga0111052_107747	All Organisms → cellular organisms → Bacteria	3418
Ga0111052_110430	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2536
Ga0111052_112179	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2142
Ga0111052_114213	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1818
Ga0111052_116716	All Organisms → Viruses → Predicted Viral	1533
Ga0111052_117704	Not Available	1441
Ga0111052_118379	Not Available	1377
Ga0111052_119200	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1314
Ga0111052_123485	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1053
Ga0111052_123611	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1047
Ga0111052_124222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1020
Ga0111052_130238	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	803
Ga0111052_132049	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	754
Ga0111052_142573	All Organisms → cellular organisms → Bacteria	556
Ga0111052_143708	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111052_100193	Ga0111052_10019338	F089055	LKVEKMNSTPERVTETPEIKIAREKLAVIFSDAKRYDGNSGVKPELGKAAIDGKDIKNIIKVNSADNEAVDLCNQALGSYGKSLDRINGNPLKIVREIGDLLQSFREDKTKGSCK*
Ga0111052_100624	Ga0111052_10062431	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENDHHYKKPMICVRSAHDNRELKDVIHLLILAGGNEIPNNHYGFLRDAGY*
Ga0111052_101123	Ga0111052_1011231	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFPFIVEQHYHSIPGIVPERTTYRVPVIPRSVEDKTKKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTLTSIGTSPVLCGVKSIEAVGIAENGNTYDLSAEMKLRIRDYSDKWKYRSSGIVTLNCENTESKTAKYVVPLGRIREEELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSMLQELPSKSVQQYYTPNGYEREATYFTALWPVHDKYNEREL*
Ga0111052_101123	Ga0111052_1011239	F032313	MACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMLTSKISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPRIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPYDWYYGRNSGRSEVTLEAK*
Ga0111052_101155	Ga0111052_10115516	F033081	MAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKSSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATATAWIVGATGVFLMGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWRERVRASVCFGLLHVTNIWYSFAAGIALSVTGFGFLMVYLWYYRKYRSQIIATAAAATVHALYNVIALSLIAVVLAIDIAKLL*
Ga0111052_101883	Ga0111052_10188310	F073671	MNKEQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKVYK*
Ga0111052_101883	Ga0111052_10188316	F067846	MSIIAEWERKTFNDYDKQCSKEDDYNRAVEMEIEAIKEDIANGDDDAICAFSEKMLDYDFLKAVILGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND*
Ga0111052_103632	Ga0111052_1036322	F054109	MVGRPKSKKGAKVHTAFKIYPADKERAQAMAEKLDMSLSSYINKAVLEKVARDEKSEN*
Ga0111052_104151	Ga0111052_1041513	F053092	MQSDQGLILCLTHALLVLGALILEPAEMENTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELIAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0111052_105542	Ga0111052_10554210	F054109	MVGRPKSKKGAKVHTAFKIYPADKERAQAMAEKLDMSLSSYINKAVLEKV
Ga0111052_107747	Ga0111052_1077475	F078842	MIISSIYKIADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEVKKTYDEALRKFDKLIIPEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKTHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEVSISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDVYEVNL*
Ga0111052_110430	Ga0111052_1104304	F099454	MKASKLLWAVVMALTFVLTSCDRLTDEPTLEDRGYYKYFDSTAQHKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKV
Ga0111052_112179	Ga0111052_1121792	F045567	MRQRDGRDTLTEELEGDITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPIDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSDRGYVVERVVR*
Ga0111052_114213	Ga0111052_1142132	F054111	MNKSLESITHEEFLKLMEHLKNLQEFTFLEYIIAPEADIFYFNFMEKTVKIKWDLDYGLFLETEELSTADRDLFLNILDKEILFLI*
Ga0111052_116716	Ga0111052_1167162	F054109	MVGRPKSKKGAKVHTAFKIYPADKERAQVMAEKFDMSLSSYINKAVLEKVARDEKSENQTETN*
Ga0111052_117704	Ga0111052_1177042	F085820	MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVVAAREEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSKKGKK*
Ga0111052_118379	Ga0111052_1183792	F032313	MACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSITKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK*
Ga0111052_119200	Ga0111052_1192001	F097490	MKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0111052_123485	Ga0111052_1234851	F089056	PLIIKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0111052_123611	Ga0111052_1236111	F051212	MKKFFFIFVLYWLYSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSETGGDTDGKNVHLVITKDSIIYRLTEGVTDERTIADLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTIKIIIKTDKKEYSKTDIQANKTWDYITKQIIDIKYSQLYNHLNLEK*
Ga0111052_124222	Ga0111052_1242221	F092230	MRQAHKRTVDKLKAYLLKVFFPLFIVCIILVAFFRQIGCGSDGDYAFKISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQSTEEKEARDKVDDAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIILPPC
Ga0111052_130238	Ga0111052_1302381	F094007	MKSKTVEVLALARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDKDFTKRNRIIVEMCDLFGRIRRRAGFAECHRGRGDYDRARSIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA*
Ga0111052_132049	Ga0111052_1320492	F057446	MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASLVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0111052_142573	Ga0111052_1425731	F061925	MSWEYSINLDSEESVSSVVADLKICKLFSSSTTDYIDWKNSEPIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHITDCDTDEEVTLEHIFRSVI*
Ga0111052_143708	Ga0111052_1437081	F043990	MIKKLGIIFTFGVIILGIVVYANHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFMKLNKLPIKEDLPPNGIPKQFLNIANGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL*