3300007980: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159207311 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007980
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053170 | Ga0114366
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159207311 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 130433264
• Sequencing Scaffolds: 24
• Novel Protein Genes: 24
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → unclassified Neisseria → Neisseria sp. GT4A_CT1	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F040149	Metagenome	162	N
F040685	Metagenome	161	N
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F057446	Metagenome	136	N
F061926	Metagenome	131	N
F064819	Metagenome	128	N
F067846	Metagenome	125	Y
F071327	Metagenome	122	N
F077781	Metagenome / Metatranscriptome	117	N
F081456	Metagenome	114	N
F085821	Metagenome	111	N
F094006	Metagenome	106	Y
F097525	Metagenome	104	N
F101358	Metagenome	102	Y
F101359	Metagenome	102	N
F103431	Metagenome	101	N
F103434	Metagenome	101	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114366_1000792	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	13153
Ga0114366_1001132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	10323
Ga0114366_1001792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → unclassified Neisseria → Neisseria sp. GT4A_CT1	7406
Ga0114366_1002819	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	5430
Ga0114366_1003922	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4206
Ga0114366_1004428	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3861
Ga0114366_1005191	Not Available	3435
Ga0114366_1007863	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2569
Ga0114366_1011129	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2017
Ga0114366_1012811	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1823
Ga0114366_1016033	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1544
Ga0114366_1016432	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1516
Ga0114366_1017990	Not Available	1414
Ga0114366_1025382	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1067
Ga0114366_1025881	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1051
Ga0114366_1027992	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	983
Ga0114366_1028157	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	979
Ga0114366_1029187	Not Available	950
Ga0114366_1029418	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	943
Ga0114366_1034306	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	825
Ga0114366_1039540	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	728
Ga0114366_1045069	Not Available	644
Ga0114366_1045954	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	633
Ga0114366_1055868	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114366_1000792	Ga0114366_100079217	F085821	MDHIFEQLARLAETKKQQTAIAKFIEKGFKFTRQSDAQKFTFLVYDFFVAGNIPAMQLCIDYLVAQGYPTAENEKQFLNWVFMEPIYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEASVNKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLCTAETTESQQELVAETQSHIALLKDLYKKVNKIK*
Ga0114366_1001132	Ga0114366_10011325	F067846	MSIIAEWERQEFNKWDKQCSKQDDYNRAIEMEIEAIKEDIANGDDDVMCAFSEKMFDDEEFLKAVALGTDYEEMRIKILTAMAEERLEQLEKDYRNGYILNN*
Ga0114366_1001792	Ga0114366_10017928	F103431	MNKYSTTTLMIDLDALIVGMLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFNGAFGENIADCHAEDDKDKDTESKEEGFHVCIPE
Ga0114366_1002819	Ga0114366_10028194	F101358	MDGTPKERAIHPDTHIIPKHENVPQYLWNVLRSSGQLDEGWIDEEIITEDGVTLMRMTKLVNRSNIHRLEKCVPLAVLQEQNIDFTNAYLQRAYGVIVKDGRLQPVADATHAASQSSATEQETEVLPAQGDDTYEHLSGDSARQLVGSVAAKASGEVDNSLLVERALERVR*
Ga0114366_1003922	Ga0114366_10039223	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGEAVASFKRE*
Ga0114366_1004428	Ga0114366_10044283	F061926	MIKTAKHIKTFLASMLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS*
Ga0114366_1005191	Ga0114366_10051911	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLEPRIIGKAMKPIALPHVARLDEGVFNEGLPGFGDFVNAVIALRPAGDAKAGQGGGKFGG
Ga0114366_1007863	Ga0114366_10078632	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASLVFIVIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0114366_1011129	Ga0114366_10111291	F094006	MRGTLEPAGPTGALHEPTVSVEAHIGELQAGGIACRCLFAFGGRDLLAVAELGAKAPYAIDMYDIALCEPLSELFAEELEYAFNFGA*
Ga0114366_1012811	Ga0114366_10128113	F051213	MKAYKLLWAVVMALTFVLISCDRVTDEPTIEGEMKKLFDSQAQRKSFRVLTASGKPYNHKVDWHIVGIMVPSSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRSVYFSTRNSDRQITLPDMRVTQRAE*
Ga0114366_1016033	Ga0114366_10160332	F040149	VADEGAEELRWEALIKEQGIPVLFVEVEAWYDGRVSSSEILHSVGIALEREPRLAPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETVVMQLLNIHRMF*
Ga0114366_1016432	Ga0114366_10164321	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILTCAGMITYVYTYLKKHQKLNLKIVIIALASALLFQY
Ga0114366_1017990	Ga0114366_10179902	F047508	ELAGSPTPPCDLSPLGADIVVARTMEAIATDAVLVIELVGEPIHIGMLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0114366_1025382	Ga0114366_10253821	F105380	QGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGSRLVYNRLCKGRMMDDISADDYEAWKRTPVNRASNFVNKFISARGNSDLDFISNSIRSNVANNIKGYAEFLASITKEQENVNTYEEFIEWTKNTNWLK*
Ga0114366_1025881	Ga0114366_10258811	F101359	LKTKNLIFKMKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK*
Ga0114366_1027992	Ga0114366_10279921	F103434	VVEVTLAVVKEGRTGRRFERGDTFTIDKVLVQPSAGNALKATENRVIRGDLTDETILKIFGTGRKWPGGPHSWVKIIKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0114366_1028157	Ga0114366_10281573	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFESNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0114366_1029187	Ga0114366_10291871	F077781	LRPTFCSATGTPPPIAAPARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLSLGFPRPHPGTPGLGIFWPFLALQSLSETPSHARMPRVTVARTSPETLEIPPLRTASGKRPKP*
Ga0114366_1029418	Ga0114366_10294181	F047127	KTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIKEILEKYNSK*
Ga0114366_1034306	Ga0114366_10343062	F081456	LGYRLFLEEGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAE*
Ga0114366_1039540	Ga0114366_10395402	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTIKIIIKTDKKEYSKTNIQNNTTLANNAIAEAKKHTSVTAGNNVTVTTSTNAAGGTDY
Ga0114366_1045069	Ga0114366_10450691	F053092	PPVPAAVPARGELIAVPAQRPGVSLQKPPAPLLVLGALILESAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELVAELADTTVIASSDLTDPIVKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0114366_1045954	Ga0114366_10459541	F064819	MILKDSQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMISEEDLDIERSDLEDLTRNLKDLFECKIRKFFFQNIDETIEIVFSINDIGAIAVEGKMYDENYMNSINFSFQTDLNGIAIF
Ga0114366_1055868	Ga0114366_10558681	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDKFKKLRDGPSEQPVDGQDEVIIIKTDKKTYRKMNASGNDHDRETWYDLLQIIAEE