3300007979: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765094712 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007979
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053064 | Ga0114002
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765094712 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 113498527
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046431	Metagenome	151	Y
F066860	Metagenome	126	N
F072446	Metagenome	121	N
F077405	Metagenome	117	N
F078842	Metagenome	116	N
F092230	Metagenome	107	N
F097527	Metagenome	104	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114002_100118	All Organisms → cellular organisms → Bacteria	72981
Ga0114002_101057	All Organisms → cellular organisms → Bacteria	15794
Ga0114002_101234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13869
Ga0114002_104812	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	4193
Ga0114002_107496	All Organisms → cellular organisms → Bacteria	2619
Ga0114002_107865	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2467
Ga0114002_108724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2197
Ga0114002_109769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1944
Ga0114002_110559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1784
Ga0114002_115735	Not Available	1122

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114002_100118	Ga0114002_10011841	F046431	MKRISKIGITIILILSIIISCGSVIISRAVESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSTFETIGLTDFSNNATDEEVKVLNVYPHSKNIGKLWEGSSAFQTLPMVTVTYLDGHTETIEKSALLKAWMEGRNSK*
Ga0114002_101057	Ga0114002_1010573	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWSGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARAIAGLSPDDASKIPAYIKRASIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLSFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINKIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYILIGLWADYVVKRTVKYE*
Ga0114002_101234	Ga0114002_1012348	F092230	MVDKLKAHFLKVLLPLFIVCVIFVAFFRQIACGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYNNMAYGEGNVEVSDSTSTGEVQNTEEKEARDKVDDAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAITIGYYSYLKPETVYGFYCKLRRKEKYPSDENLVKRIGFLVIILPPCMLFLLIV*
Ga0114002_104812	Ga0114002_1048122	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVAFGIAEDRE*
Ga0114002_107496	Ga0114002_1074961	F078842	MIISSIYKIADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEVKKTYDEALRKFDKLIIPEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKTHDESSVNTLFRTSYIKYSKEPDDLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEVSISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDVYEVNL*
Ga0114002_107865	Ga0114002_1078651	F078842	MIISSIYKIADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFIDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQLSPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLRYDFLEYIKSLSSSVFCDNLRKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDIYEVNS*
Ga0114002_108724	Ga0114002_1087243	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDRTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLRGEMKLRIRDYSYRLKYPSGIITLDCENTESLTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPSKSVLQELPNKSVLEKHIKFVANKERTQRFYDLEIENFNEETI
Ga0114002_109769	Ga0114002_1097694	F077405	PWQGRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDWLKIVQKQKARLK*
Ga0114002_110559	Ga0114002_1105594	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFITIPAAGVEPARPCGHWILSP
Ga0114002_115735	Ga0114002_1157351	F103432	MKLINSLFSLSLLFALSGLFCTTACQDDAEPTQRAGFISTDSLIHAAEVYDGKAFEHVVSTTAAGLRVSEPRRVVPMLPRQLHVTMEGKTVFRRHSLPSVSAYSLRVVAVGDTIYRQKESDAEFNADLDALFRQSIGIAPRLFGVRELSVVGIDRKGKPRDLGNYSYPLLQGKRRNVNFRTKEGVFHEYFEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDG