3300007924: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764143897 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007924
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053031 | Ga0113552
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764143897 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 130600347
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F046433	Metagenome	151	N
F066860	Metagenome	126	N
F072446	Metagenome	121	N
F077405	Metagenome	117	N
F080164	Metagenome	115	N
F092230	Metagenome	107	N
F103432	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0113552_100033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	118020
Ga0113552_101601	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	12143
Ga0113552_101779	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	11264
Ga0113552_102957	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	7374
Ga0113552_103429	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	6515
Ga0113552_103806	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	5886
Ga0113552_111473	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia	1978
Ga0113552_113539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	1648

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0113552_100033	Ga0113552_100033109	F077405	LLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQK*
Ga0113552_101601	Ga0113552_1016018	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPERTTYRVPVIPRSVEDKTKKEYNDMELGKEAHLVFRATVHGDTINRRRKELDAIALQLGRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLSWEIKLRIRDYFGRVKHRSSGIVTLDCEDTQSKTAKYVVPLGSIREDELAEHIQPELKFYLPVKRCMDFSSISFAITLFNGKVLSFQHKLPSKSVLQELPSKSVLENYQQYGFIPESTYFTTLWPLPDYKYNEREL*
Ga0113552_101779	Ga0113552_1017792	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHVSKDHLTTIVRVSFIVMSTSKTIAIISGFVVVLSLFVAVTFGIAEDRE*
Ga0113552_102957	Ga0113552_1029577	F066860	MTAKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAXXXXSKTIAIISGFVVVLSLFVAVTFGIAEDKE*
Ga0113552_103429	Ga0113552_1034292	F103432	MKLIHSLFSLPLLFVLGGLFCTTACQDDVEPTQRTGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVTMDGKTIFRRHTLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFRQSIGIAPRLFGVRELSVVGIDRKGKPRDLGNYSCPLLQGKRRNVNFRTKEGVFHEYFEAASVDTFSVKSNWLFKTKAEPSLYAXXXXCTKLRFTLTLVDGRSLVAEVPLY*
Ga0113552_103429	Ga0113552_1034293	F080164	MRPTSFVLSLLLGVIGLAPCAARQVTLRERALAFPLITEKDATEVDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLLYKGQEGRLVLCEYYESHRGDLFLDVANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS*
Ga0113552_103806	Ga0113552_1038062	F032313	MYRLLILLFAITLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITNEFTCRNGVILRHMQGIDINLVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRKSGRSEVMLEAK*
Ga0113552_111473	Ga0113552_1114732	F046433	MIELPVSPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYMGTETSDPSFMKSRYKTTEYEAINDFVQFIEMTKHYLPDYMEYCAKELIDELVFLGMSELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKVLFLDDWIISGDQVKKRIAGFGVDNDPESHEASVLVMAASSNYIDNGIGADSLWGEATYPVEAYYRLKNDNNDWGVSRVTGIHSSTDSAFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLDKG*
Ga0113552_113539	Ga0113552_1135391	F092230	MVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIQCLYAVNKNKDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYNNMAYGEGSVEVSDSTATGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIVMTIGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV*