3300007869: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764305738 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007869
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052935 | Ga0111024
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764305738 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 54376829
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047508	Metagenome	149	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F064818	Metagenome	128	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F099454	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111024_101618	All Organisms → Viruses → Predicted Viral	4148
Ga0111024_102115	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3289
Ga0111024_107246	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1272
Ga0111024_112505	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	845
Ga0111024_115935	Not Available	706
Ga0111024_118553	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	629

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111024_101618	Ga0111024_10161810	F067846	MESLQAQWESQEFNKWDRQCSKEDDYNRAIEMEIEAIKENISNCDDDVICSFREKMLDYCEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLDQLERDYRNGYILND*
Ga0111024_101618	Ga0111024_1016184	F073671	MNKETEHELAELYAQERSLEKALELVREKIRELVNYMDKNKEQK*
Ga0111024_102115	Ga0111024_1021153	F058221	MRNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0111024_107246	Ga0111024_1072461	F059076	QNINETNAAGKTKQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVKGDWISNFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGSNTPSVDHGGNKYGVTTAPATVLLQQHGANWAIYADYPNIGSYEFTSGSTAIGNLVNGTWVITLLVGKRDAVNFTELNFNQRGKDDGQGIKDNTYKAGIENFLQKLD*
Ga0111024_112505	Ga0111024_1125052	F099454	MKASKLLWAVVMALTFVLTSCDRVTDEPTIEGKMNKFFDSQAQQKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVAFIVRENKSVIDVEVQKNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK*
Ga0111024_115935	Ga0111024_1159351	F047508	MLGHRLVEGRVKYPYLRDLGEHLRHGFDTEDISWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQRGAATVEDQDFHKV
Ga0111024_118553	Ga0111024_1185531	F064818	NSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNIVTKNECKLFSPFDLIFGKKDYQQTAKQRILQ