3300007797: Human stool microbial communities from NIH, USA - visit 2, subject 764325968 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007797
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052820 | Ga0105663
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764325968 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 148770373
• Sequencing Scaffolds: 9
• Novel Protein Genes: 27
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F051936	Metagenome	143	N
F055775	Metagenome	138	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F068811	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F085718	Metagenome	111	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F093883	Metagenome	106	N
F098313	Metagenome	104	N
F099451	Metagenome	103	N
F100397	Metagenome	102	N
F102167	Metagenome	102	N
F105374	Metagenome	100	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105663_100064	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	146637
Ga0105663_100228	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	77482
Ga0105663_100584	Not Available	41160
Ga0105663_103620	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	6471
Ga0105663_104726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	4785
Ga0105663_104916	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	4582
Ga0105663_106578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3280
Ga0105663_110145	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.	2009
Ga0105663_116010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1183

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105663_100064	Ga0105663_100064106	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRGIRGYIYLQGSSKSNVSYYVGRLEKDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV*
Ga0105663_100064	Ga0105663_100064108	F078006	MEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCGIKEEATFDLATALDVLNEPLPRWCKSYGVYPEQYKDIDRWYNSDNYNKKIFKEI*
Ga0105663_100064	Ga0105663_10006411	F077313	MGKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGMEPLVNTNKGLPAQASPLGIYSMDTPDRLMDKYDTAFEKKDMNDMFPASFKGSLQRIAENYQDNAITFNNVTVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGVKTANVVGTVMSGIGGVLGLARNVFSGMASEQGTRTNIRLAQEREARQRRQSQMRYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHVDGGTPVSLEEGTEVITDDTTIESDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALDKLKKNDKIDDENTRRLNASVLSKAINDSNETVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEDDVAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINADERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYNTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKFGQYSSSRPMIGLDVVTEDQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMNIGDVEDPDVKLDMPELIDASTLPKTNTNTNTGKSDNNRGGRNIVGGGLDFPEVFRMTPGPVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG*
Ga0105663_100064	Ga0105663_100064113	F080673	MDEIVKLQDEILSYLRNNITKDEAYYILTTDKEMIEILISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKHRVILDLTGHRVDRDDRDKIDFMFIYYMARLCE*
Ga0105663_100064	Ga0105663_100064120	F057001	MTSKDLNKVQSEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKENDIKVDKDIVPALVSLAKEKEVVIQLCKDILPRINNTFCAYKEIEREYLDKLDQDKNVKMTVDKIESIAILGTTHKRFGYNEPVEYDGGVYYDVFNGSDKRIIKCAVPIKRYTYNLIAKCITYYLTHPKNER*
Ga0105663_100064	Ga0105663_100064129	F102167	MDINQIKKCLPSGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMDKLRMLIGNAIMAVGYRNNPLNGDGNTAIK*
Ga0105663_100064	Ga0105663_10006414	F050794	MTEFNERLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAGKLELDTDAIENMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYNYISSI*
Ga0105663_100064	Ga0105663_100064144	F058555	MFGTKITLLQKMKSNFDKILTEKYIPRNIQAKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIRIALSDIVKYKYKASKVPRIKDMFVKKGESIYTCIDKNLDSDSRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVVNTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG*
Ga0105663_100064	Ga0105663_100064153	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEDDFVALHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDFDTTYASTAKSIMEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKADE*
Ga0105663_100064	Ga0105663_100064160	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWESLNKGNHIDDPESTSFGLPDDYLWFSNIKGSFSYKGCKVGDFVMWEAKNENVHELLGDDSNKPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLTGYINAAGMQSTDIDPELPDPLVEEILDMVAKQFSLNENELNRYSMDKDNVASFK*
Ga0105663_100064	Ga0105663_100064167	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDNYRIIFRSLAIQHMKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTAFPIIDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLIYIDLSNVGQRMTVIPEAITSKTEVYYLNMFNILDLRDIESSGIRNVKNMKNLQTLKLSSCYLDRYIKEFNDLPKLTLLYMAHGPSDMWNYFDINTLPFFEVDKINPNITDLFFLNDWVSGERRTGWNDDNMSGRGLEHLTSFSAINSNSLRMDKLPDYIYEMRAITRFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDTIFPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQKWTIKPA*
Ga0105663_100064	Ga0105663_100064169	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSIRGWKIRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILAVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS*
Ga0105663_100064	Ga0105663_100064170	F075481	MRLRISLRAVFCLGLLLSLSSCGSRRQVSETSIDSRLISRIETMIDEVMDRKIVEIKTSDLNADIVITEREFDTDKDVDPTTGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGVKDIDKKTDIKHKDVDDKKESKWPIAVTSISVLLILLGLIYLLKKMKVL*
Ga0105663_100064	Ga0105663_100064176	F106193	MGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASKSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAIYIKP*
Ga0105663_100064	Ga0105663_1000642	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGSGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLI*
Ga0105663_100064	Ga0105663_10006428	F098313	MREKKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHNGEWGNKEDMDKEASFVNLVKDRDDDGRFAILWNFSSDDDITIKNTCHESFHVAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGGCAYDFLYSNSTE*
Ga0105663_100064	Ga0105663_10006452	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDINSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRENKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDHKDIDWEALRLWLDKYDEPTDKGMVNSPIQFMYLYLYYAFNK*
Ga0105663_100064	Ga0105663_10006464	F083451	MQKDQIMEEKDVLNLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRKEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM*
Ga0105663_100064	Ga0105663_10006483	F078005	MKKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDDNCEINVKNIEMNLRVEANVMAGMDDMDFTCLMSEVYKQKAVKAIMMEKDDDEDN*
Ga0105663_100228	Ga0105663_10022880	F099451	LCPGEYASGLLIKKIMAIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLSDDEIKELYNKYGRIYPYPYETQYPELEFDDIGVSDKVLCLGVELKDK*
Ga0105663_100584	Ga0105663_10058433	F055775	MAQIAQQDNLVIEVAKSTATLDGDTKKKLIECIKGGTITDVILVTKEAEKKISHARVVSWLVDTTGNSPKYKIDIINVSSGNVEGIALN*
Ga0105663_103620	Ga0105663_10362013	F099451	MEIKNVGQLRKIIENLSDDYEIEMRIRRKLTQEELKHCRYPYPYDTEYLILEFDDIGVSDKVLCLGVTSNR*
Ga0105663_104726	Ga0105663_1047266	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSNINRLNHLI*
Ga0105663_104916	Ga0105663_1049164	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRSVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0105663_106578	Ga0105663_1065781	F100397	MKKLIAILVLSLSLILCLTACGSKMPYDLSETASVELHAYNNDSTEPFAKIVVDGEDVATIVEMFNSLKLKEMKYTEPSIRGYEFWFRDENGSEIVKIELPYGPSPWLVVGGTEYPYQDVNGGVDVDYLAQLVDMTISAGPMQPEDGVDHNAPVEPLFYKSAPGLSIQHDGQSVRALPGTSSWQYMNPDGTSTGIEADSMHPLDAKEYMPVLPAVEGEAWLGFDTAPDEITVKAWPVSKWGDLSAVDEGIVVP
Ga0105663_110145	Ga0105663_1101451	F051936	AFGFSVLQEHAVMTPVISIFFATLIIKYLYIHISIKSNYHAQ*
Ga0105663_116010	Ga0105663_1160103	F068811	MDQDGSEHNICSNREGLCPGKEPHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVSVSLILNENVSETLCIFSIDKTNCCRI*