3300007796: Human stool microbial communities from NIH, USA - visit 1, subject 764143897 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007796
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052872 | Ga0105889
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 764143897 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 173992781
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct04y17	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Enterocloster → Enterocloster citroniae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Carnobacteriaceae → Trichococcus → Trichococcus palustris	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055715	Metagenome	138	N
F067720	Metagenome	125	Y
F076190	Metagenome	118	Y
F084124	Metagenome	112	Y
F090515	Metagenome	108	N
F099269	Metagenome	103	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105889_100062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	134802
Ga0105889_100242	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct04y17	73307
Ga0105889_101031	Not Available	26280
Ga0105889_101040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Enterocloster → Enterocloster citroniae	25994
Ga0105889_106317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3876
Ga0105889_108341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2733
Ga0105889_118694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Carnobacteriaceae → Trichococcus → Trichococcus palustris	1125
Ga0105889_124421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	862

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105889_100062	Ga0105889_10006247	F084124	VWEKPTNTFRLRNLTIAKQVKAFARATKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSLSTQTAWLFATEELLYRKILWALPKPAIFEKIE*
Ga0105889_100062	Ga0105889_10006252	F084124	LNITALAFARATKENTLPLHGQRNELTVFLAFPVTMAIACFNKLSFSTQTTTLFAPEELLYRMIFMGAAQTRKPLKRLDLNFLII*
Ga0105889_100062	Ga0105889_10006268	F084124	LNATAKAFARATKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKILWALPKPAIFKKIE*
Ga0105889_100242	Ga0105889_10024277	F099451	MEIKNVGQLRKIIENLPDDFEIEMRVRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSNE*
Ga0105889_101031	Ga0105889_10103145	F067720	MASITYEHLGDVTEMLAAQEQFRGITKMVCARFRDLTKTYHFGNVNKLVTFCHQFAVLGNMVRNAGQLPQPFWLGAACGGGSGSAAPRAARA*
Ga0105889_101040	Ga0105889_1010403	F090515	VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS*
Ga0105889_106317	Ga0105889_1063177	F076190	AGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVGIRVEKPQNNSLYSYFQREPL*
Ga0105889_108341	Ga0105889_1083414	F076190	AGGSITISVKNVFTAASRVSGRVWSLARITVPNGLKSVRIRGRKTQNNSLYSYFQREPL*
Ga0105889_118694	Ga0105889_1186942	F055715	LTKVNKFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAKILDN*
Ga0105889_124421	Ga0105889_1244211	F099269	MQKEASAAMRKPPFFVHGVLLSVQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*