3300007753: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159591683 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007753
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052849 | Ga0105778
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159591683 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 78653717
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054110	Metagenome	140	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105778_100652	All Organisms → cellular organisms → Bacteria	11686
Ga0105778_102445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	5125
Ga0105778_118168	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	875

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105778_100652	Ga0105778_10065211	F073671	MNKEHAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKV*
Ga0105778_100652	Ga0105778_1006525	F067846	MSIIAEWERQEFNKWDKQCSKEDDYNRAVEMEIEAIKEDIANCDSDALCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYKNGYILND*
Ga0105778_102445	Ga0105778_10244510	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKAKQLYKKESEYSSTKQHEVLLFLVKTYKGGD*
Ga0105778_118168	Ga0105778_1181681	F054110	VLDVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD*