3300007742: Human stool microbial communities from NIH, USA - visit 1, subject 763577454 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007742
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052843 | Ga0105758
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763577454 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 194424929
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F032286	Metagenome / Metatranscriptome	180	Y
F047126	Metagenome	150	N
F055775	Metagenome	138	N
F067720	Metagenome	125	Y
F068811	Metagenome	124	N
F078004	Metagenome	117	N
F084124	Metagenome	112	Y
F088914	Metagenome	109	N
F089053	Metagenome	109	Y
F090513	Metagenome	108	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105758_1000739	Not Available	33689
Ga0105758_1000939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	27888
Ga0105758_1001259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	22891
Ga0105758_1001326	Not Available	21679
Ga0105758_1001431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	20181
Ga0105758_1006509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4147
Ga0105758_1007970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	3351
Ga0105758_1009612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2795
Ga0105758_1012492	Not Available	2168
Ga0105758_1015820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp.	1727
Ga0105758_1020552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1343
Ga0105758_1042761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	650
Ga0105758_1043360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	642

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105758_1000739	Ga0105758_100073911	F055775	MTQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVEVIALN*
Ga0105758_1000939	Ga0105758_10009397	F084124	LLFGGLNKQAKAFARATKENTLHFHSQRIALTMFLAFLFIMAVACFNKLSLNTQTATLFATEEVISKDFMGAAQTRKPLKRLDLNF*
Ga0105758_1001259	Ga0105758_100125913	F088914	VGRILPVYSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNSGKFIVFSAWYAAKALEMDVK*
Ga0105758_1001326	Ga0105758_100132630	F067720	MASTTYRHLGDVTEMFAAQEQFQHVTKMVCARFRGLTKTYHFAVIGNMVRNAGQLPQPFWLGAACGGGSCGAATVPART*
Ga0105758_1001431	Ga0105758_10014317	F047126	VYLKTKKMMNISQTQAGFKAKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC*
Ga0105758_1006509	Ga0105758_10065094	F026489	ENQKSASDFDALEPRKRGCSPLLTPKRRAPPEKTEDSRLFGVKIF*
Ga0105758_1007970	Ga0105758_10079705	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDRPKKAAPFFNF*
Ga0105758_1009612	Ga0105758_10096125	F089053	MEGPRPDKFAFGVRIGRVVDECRLAKGCIRKWLYIFANGQLKLSTAEEVNVKNMEVFL*
Ga0105758_1012492	Ga0105758_10124922	F090513	MEWKLLHIKHILYMQPFGALKIAPQRVGNKNGTKAVLQGWAAAFVPYMLSFTYGNTA*
Ga0105758_1015820	Ga0105758_10158202	F032286	MVKWVYQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADYRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEI*
Ga0105758_1020552	Ga0105758_10205522	F092227	MNEQKHKRWMRIGCLVLAGVFALSLLSSVIMMLLY*
Ga0105758_1027988	Ga0105758_10279881	F078004	LLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
Ga0105758_1042761	Ga0105758_10427612	F068811	MDQDGSEHNICPNREGLCPGKEQHGASGWKKIFQHGKEPLRSKDSVSQYCNKKVAVLLILNENVSETLCIFSIDKTNCCRIK*
Ga0105758_1043360	Ga0105758_10433601	F026592	ASPQGIAALAAQGGVATLTERSDEIFPVGQFSSADRE*