3300007712: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_D2_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300007712
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114514 | Gp0125921 | Ga0102929
• Sample Name: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_D2_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 663047453
• Sequencing Scaffolds: 22
• Novel Protein Genes: 23
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → wetland area → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4968
  • Long. (^o): -122.1333
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003807	Metagenome	467	Y
F005874	Metagenome	387	Y
F014681	Metagenome / Metatranscriptome	261	Y
F021544	Metagenome / Metatranscriptome	218	Y
F022145	Metagenome	215	Y
F022890	Metagenome / Metatranscriptome	212	Y
F025922	Metagenome / Metatranscriptome	199	Y
F032166	Metagenome	180	Y
F050177	Metagenome	145	N
F061972	Metagenome	131	Y
F063362	Metagenome	129	Y
F063375	Metagenome	129	N
F075754	Metagenome	118	N
F086685	Metagenome	110	N
F086847	Metagenome	110	Y
F097996	Metagenome	104	N
F099170	Metagenome	103	Y
F100427	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102929_1028263	Not Available	2725
Ga0102929_1037875	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	2262
Ga0102929_1060563	Not Available	1687
Ga0102929_1062676	Not Available	1650
Ga0102929_1067649	Not Available	1575
Ga0102929_1081624	All Organisms → Viruses → Predicted Viral	1400
Ga0102929_1088520	All Organisms → Viruses → Predicted Viral	1331
Ga0102929_1113233	Not Available	1141
Ga0102929_1125574	Not Available	1070
Ga0102929_1134165	Not Available	1027
Ga0102929_1134589	Not Available	1025
Ga0102929_1154441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	943
Ga0102929_1156161	Not Available	936
Ga0102929_1164692	Not Available	906
Ga0102929_1168194	Not Available	894
Ga0102929_1210370	Not Available	779
Ga0102929_1212478	Not Available	774
Ga0102929_1249950	Not Available	702
Ga0102929_1321708	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	603
Ga0102929_1342815	Not Available	581
Ga0102929_1342923	Not Available	581
Ga0102929_1375666	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102929_1028263	Ga0102929_10282637	F061972	MNHVEKNETQYQELEYDSMYSEVLRHREAFLKSKYNTDLESEYNCIVTYCLNELKH*
Ga0102929_1037875	Ga0102929_10378751	F014681	DCKGMVDLGVVLMIGIAFVGLMVVAYIVWTIDDQLDATGSAANSLANITGGFDDAVNLLLIAVTITILAIAISALLMLRGRT*
Ga0102929_1060563	Ga0102929_10605632	F005874	MGYGIPDDPPDQDLTPQQLHDRIDEVTNLSADELRAFKDSDFNEAYNMAKSDAAQPGDEPLDDVIRLLETPASEYRDVDDGFNEVEEGRELLSFQRGTQAQIESQGLGENYLTDLEVMQVREAASIRWGIDPDDEREWL*
Ga0102929_1062676	Ga0102929_10626763	F099170	MQVLETLIAFTKSLPSWLGAVVEIMIVAVLFMTALTFLAGIWCGLKVIGKRANSIEEIRFFPPRILFREHKD*
Ga0102929_1067649	Ga0102929_10676494	F050177	MVRIPSDPPDDELTPRQLYDRFEEVTNLTASELKAFRDSEYNQEYLEGNSDRAQGGNEPLDDVITLLETPPEQWRDVEDGFNEIAEAREMLDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAASIRWGIDPDDEREWL*
Ga0102929_1081624	Ga0102929_10816242	F063375	MTAVELSDRQVTTIETVGGHLQTVIAYGGVFMAGVIIGFESSDYPMMWPITQSYTGKAVTYPYTQMLEIGIGILAVCVMMIILLEWVVYLHER*
Ga0102929_1088520	Ga0102929_10885201	F021544	MANFDLNKLMEAKNPQAVMLEETRGLKNKWERTGLLEGLGEIGK
Ga0102929_1113233	Ga0102929_11132332	F086685	MIELTTIPLVVWVIGCITFVILGHELTHYIAWLPVATSIEYHFEEQYIEAEYPDTPFARKWAVVAGISPVIVATGLVLALIATGWDPTATWHHITASAAVVLYGVSGGKSDFEALLNLGRTRRSPAADD*
Ga0102929_1125574	Ga0102929_11255742	F075754	MMTSYQAGIEWHTTMNPWEPIHARVDDTSEWYAAQVGRSEYLRDSEEDADMHHRKGGVVAEGLVKAIFPGMEWWDTHSFDTFLGGTRYDIISRGLNRGEPRQHYVHKIQAKKEERAKPSTHYYAVVRNHPDYWLIGHINSIRFWYLCDRSAPEFWDDEQFDGGFLSYEHFEQLPMTEAISPPPGIEVFGQG*
Ga0102929_1134165	Ga0102929_11341651	F032166	EAFRDSEYNQEYLEYNSERAQRGNEPLDDVIRLLDTPRDEWRDVDDGFNEIAEARELLDFQRRTQAQIKSQGLGTNTIAEYDDMTFREAASIRWGIDPDDEREWL*
Ga0102929_1134589	Ga0102929_11345893	F005874	MAMIPNDPPDDELTPRQLYDRFEDAVNLDVDELRAFKASEYNEAYNSMKSEAAQPGDEPLDDVIRLSETPASMWRDVDDGFNEVEEARELLDFQRRTQAQIKSQGLGENYLTEARNMQKREAASIRWGIDPDDEREWL*
Ga0102929_1154441	Ga0102929_11544412	F025922	MARNRIIYASQSVWVNGEVLYRVQSLGTTTTFNSEDIFELGHLDIIDVVDDVPAVAVTLNTNDFGDVKTLATLAQIAPAKIMMDATADADNANLVAGGSTYLHGVALADFAVTCGNLTGFTLWAPVQDECSVGTLANNIDQTLFLDEVYINNLEFSYTTGANATENYSAETDNKMWLLNAGRFVNYESTISGSMLGTDET
Ga0102929_1156161	Ga0102929_11561611	F086685	MIELTSIPLVLWAVVCAAFVIVGHELTHYIAWLPVATSIEYHFEEQYIEAEYPDTPFARKWAAVAGISPIIVATGLVVALIAIGWDPAASWHHITASAAVVLYGISGGKSDFVALFSLVQRLRSPAAE*
Ga0102929_1160654	Ga0102929_11606542	F100427	MTEVPLLVWIPFWALIATIGHELTHYVFWVPIASDIEWDVWGNELEIEQIATPWAMRWAIVASMAPLLVGTVVLMYWLSTQPAVTAHSAIMGIGLAVYTFAGGKADYGRLTDAVTTRLA*
Ga0102929_1164692	Ga0102929_11646922	F022890	MTTRKLVNLMMKSSDNNPYSGKLSKGENVLAAIELAKKFKEFADEGYTDEAMDIESSQWVEVINKLENKRLNCA*
Ga0102929_1168194	Ga0102929_11681942	F075754	MNYQTSIGWHTPMNPWEPIHVRVDDSSEWYRTQVERGDYLRDTEEDAEMSHREHGLVAEGIVKAVFPGFEWWDTESFDLFRGQTRYDIISRNINRGEPRQNYLHHLLPKKEERAKPSTSYYAVVRKHPDYWLIGSINSVRFWYLCDRTRPEWWKEQTYEGGHLTYEHFKQIKTGVGISPPPAIEIFGQG*
Ga0102929_1210370	Ga0102929_12103703	F063362	MASFIGGIVSLSVSVVVLANVFITTVNDTNTSGWDAGEIAMWGTLTIAGIAGLIFGVLQVFGLA*
Ga0102929_1212478	Ga0102929_12124782	F097996	MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLKSLVTQLNVIVRDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGD*
Ga0102929_1249950	Ga0102929_12499503	F032166	VEELQAFKGSDYNEIYNARKSDAAQRKDEPLDDVIRLLSTEPAEWRDVDDGFNEVDEAEELLNFQRRTQAQIASQGLGENYLTEEEDMTMREAASIRWGIDPDEQREWL*
Ga0102929_1321708	Ga0102929_13217081	F086847	MENYMDARELIEKSPIYDRLYKQMMSYQLAYLNGETFKTEVRKKRPSEDSNLYLDLIENTVSQPVCRYIVDTINDVLFEPSVKRDLKFCTPQG
Ga0102929_1342815	Ga0102929_13428152	F022145	MKAKQIKKDNYTVQIGYSKEAKKKKLLKFISKSGDEFEISAEELSSMLIGGVNQDTLEATFVESDKVHVVEVGRQLEFELNDDMKKGQKIKVNYSHPYPLEFAILEQVYGVAKINKDVPAFTLTDKYIEETKKKLKPEQKEYIEKFYKSFKNV
Ga0102929_1342923	Ga0102929_13429231	F075754	MKYQTDLRWHTPMNPWEPIHVRVDDSSEWYRTQVERGDYLTESKDDAEMFHREHGHVAEGVVKAVFPGFEWWDTESFDLLRANTRYDIISRNLNRGEPRQKYLHHLPPKKEKRAKPSTNYYAVVRKHPDYWLIGQMNSVRFWYLCDRTRPEWWKEQTYEGGNLSYEHFEQLPLTEPITPPPAIEVF
Ga0102929_1375666	Ga0102929_13756661	F003807	MSEDIWLKTDEQKLQSLIADEAKAINMIDSMHASIKQLRSKSSFRLALLNQLLEEKQNKNTK*