3300007596: Marine microbial communities from the Southern Atlantic ocean - KN S19 DCM_B metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300007596
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125910 | Ga0102802
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S19 DCM_B metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64515886
• Sequencing Scaffolds: 20
• Novel Protein Genes: 21
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003423	Metagenome / Metatranscriptome	487	Y
F005911	Metagenome / Metatranscriptome	386	Y
F007527	Metagenome / Metatranscriptome	349	Y
F009492	Metagenome / Metatranscriptome	317	Y
F009689	Metagenome / Metatranscriptome	314	Y
F014386	Metagenome / Metatranscriptome	263	Y
F017306	Metagenome / Metatranscriptome	241	Y
F018182	Metagenome / Metatranscriptome	236	N
F019484	Metagenome / Metatranscriptome	229	Y
F023863	Metagenome / Metatranscriptome	208	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102802_1001976	Not Available	656
Ga0102802_1004164	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	822
Ga0102802_1004243	Not Available	1747
Ga0102802_1104065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580
Ga0102802_1124105	Not Available	516
Ga0102802_1126520	Not Available	531
Ga0102802_1145449	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	756
Ga0102802_1148627	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	602
Ga0102802_1154561	Not Available	680
Ga0102802_1155955	Not Available	649

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102802_1001976	Ga0102802_10019762	F007527	VFTRGISKGLNASMPFGGQTFPTSIVGAILAAKKAQKKAKKNIISDTINKIIP*
Ga0102802_1004164	Ga0102802_10041641	F023863	MAMLALSSLSAAQNPWVNRRKNKDKDAPVAADPSSGDTDFSKLNDMVKNLQQAGAAGGAGGEDMFAGMGDMWESLMDSPEMEEMLANPELLKATIKNNPLINAIPGASEQVEALLQSDAFNDPAQLKQAMRQGVDAMKAVGSEFGSQLGAQMKLAQQNPEAFKAQMEAMMSQLAGGPEQGRALMEAAKGLWDGSADPAQLEALSKLPGMEALADPEAMKRQMAELQKMMG
Ga0102802_1004243	Ga0102802_10042432	F019484	FFYFLTILGGSLKKIAKKITTNVPISKKVYTNASII*
Ga0102802_1104065	Ga0102802_11040651	F003423	KQMRETIDRKDESIKKLEAELASYKDKEIDNVFSSLGLSTDKGFGKALKQVYDGPINTESIAQFAKDEYGYESTGQVQEVTQPAPEPIVQDDARERVAALDANSVSDVPLSQNEELAKALQSASVKDSLRARLAIMEQDKQNK*
Ga0102802_1104065	Ga0102802_11040652	F074905	MAAITLTGDTLYSQKINNFTGELFRVGGQRTPFLSAT
Ga0102802_1124105	Ga0102802_11241051	F046422	MKEMNDSDWIYTAGNSEQYPNHIVHRRKEDSLAIWPYNPLTGEIGYDDPPYQPSEMLYRPDVE*
Ga0102802_1126520	Ga0102802_11265201	F035474	QTFNFKIMSKTLFSQSINLCDDYLGFEWSQGVRTSMFDVYRRANDLDPNLAIYHYGGDRFEVRSMNYDDSKGCIIGDQVDLGTFDNIYDAQDCAEEYLKDLLLAIGV*
Ga0102802_1145449	Ga0102802_11454491	F014386	MTDATINTPAAAAERPTFKCAVNEGLKSTELPLLRLGGTVQENPHMRAFWASTCSFFIAFVGWFALAPVAIDVMYSIGECENQRKPPESNLKHKPYVTFVNIKTKKPYCVHGKTDDAKDCKEIPAAEADITACEDASSEDCTFAKANKYDLSTLPKCVCGKGTGCKTIIANAGIASVGSTVFVRISLGTLLERFGPVNVQSSLLTFGGFWVAVSSQINASWNYYLCRFLIGCAE
Ga0102802_1148627	Ga0102802_11486271	F017306	VTGLRAEPTGGGRATVRWEWSENSFDLASPGASFERDVILDPLAWAGPVRKTPKTKPVAPAPKVEVSQELRAADVAVKSEWRQNCCDDEWEIHVSHAPTGSRLVWKGTSTAEHQDVKILRHAEAEGMVRIDFVYYCGENGSNSASDRSLFVKLGAKGIEWVPKHVCSGRLYDGPCSGTL*
Ga0102802_1154561	Ga0102802_11545611	F005911	KGGRKTMSLKTRLLTMLNSKKGSALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKGKIDGADINQARLGSGTEADIESPVSELFHNANFITLKEMVKKAVIIVSDDPTATARSGVDTAYDADNSGVLIKFADADGTVIADGAGGDTIVADVHLFVNLAGTADAVTNDPYTAGEPFYYILMDDATAGFNDADKRTIDLTQFPTGILATNDGG
Ga0102802_1155955	Ga0102802_11559551	F005911	KLLKSKKGNALLLATAGAIAATFSVYFFVSITTLSADSKQRVAHLYNAYQMGQSLKAKIDGADINESRLGNGTEADVEAPIDEVFHNGKFITLKQMVKKAIIIASKDPTATERSGTDTGYDIVNSGVLIKYADAAGAIIAPTDSPDDATDTLVSDVHLFVNLAGTPDVEFENKPYQTGEPFYYILMDNTSASLAADLLTISTTQYPAGILETKDG
Ga0102802_1164448	Ga0102802_11644481	F005911	AIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQALKAKIDGADINQARLGSGTEDDLEAPIDDVFHNGKFISLKVMVKKAIIIAADDPTATARAGSDMPYDLENSGVLIKYADADGNVIAATDTGSGTDTIVADVQLFVNLAGTPDANSNSPYTDGDPFYYILMETANSGLAADDITVNLVQFPAGILATNDGGPQAEVSVILPQDDEE*
Ga0102802_1173866	Ga0102802_11738661	F009492	MLGLFGIVRAEEAVVTETTQPVVSVTGELSTDITFGDATTFTSPYTGLVFSGDGWVVSTNLSDGMVNIEEAKYSWNVVDGVTLTFGSQAEPYGLAWGLHRPSNNWFVSTPRDHSVTNGVGFGLNKWGVGADLFWGGDSMNEEMEAELYWAGRFSYGLNLLGIDSNVGLSLNSNEAQLVDVSMGNSLFTTSLEYDLSEEADGAYWLRGVVTPPQAQGAFLLIGLNSDEVVTYGVGYKCSDNMKVVSEFNSGLKDAEG
Ga0102802_1176944	Ga0102802_11769441	F009689	RELIKEIMRYIGVLHDVKATAKSIAAGGRDSVKDEESGVSDPYAIKKASASELKAKIQKLQALALKTKVPGATQKLAQIQSLPVYSETEEVAKILKEMLSDLSTRLSVIDEVDAQAKKLVDDAYDKMVHWEKELVKLADAADKAKEQMMKEKLERETLAGDKDVAGKTYDEEKAAYKIIITPYMREIYVITMIKIKINEHCD
Ga0102802_1177580	Ga0102802_11775802	F088935	MSAIGGLDVAFGARMQVVRTNVMCVAIADTGLANSTTVPKYILNTYKEALKGTVIEPDFLYLYEVADLDGSGFTTAAVSNSLFNQDNSGDGTADVTALEVNGVLRMISQCPLAVNSAYADTTAAHGAEGAAHTAHNYYDINGNLALESVLSLSAMAL
Ga0102802_1182733	Ga0102802_11827331	F005911	MLKSKKGNALLIATAGAIAATFSVYFFVTLTTLSEDSKQRVAHLYNAYQMGQSIKGKIDGADINQARFGSLDEDQIEAPIDDVFHNGKFISLKTMVKKAIIIAADDPTATTRGGVDTPYDLNNSGVLIKYADASGAVIATTATGSADQTKIVADVHLFVNLAGTADADSNSPYADGEPFYYILMDADTA
Ga0102802_1192125	Ga0102802_11921251	F005911	KKQTKKRGEKTMSLKAKILHLLNSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGSDINQARLGTGTEADLEAPIDDLFHNANFITLKDMVKKAVIIVSDDPTATSRSGSDTGYDLDNSGVLIKFADADGNVIADGAGGDTVITDVHLFVNLAGTADADQNLPYDPGTPFYYILMDHDTASL
Ga0102802_1192643	Ga0102802_11926431	F005911	KKGGLKHIKIIRLKGGKTMNLKAKILNMLNSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGADINQARLGASTEEQLEAPINDLFHNSNFITLKDMVKKAVIIVSDDPTATARTGSDTGYDEDNSGVLIKFADADGNVIADGTGGDTIITDVHLFVNLAGTADADQNLPYDPGTPFYYILMDHDTASLDATDRTVDMVQFPTGILATNDGGPQAEVSVILPQDGEE*
Ga0102802_1198194	Ga0102802_11981941	F018182	MNPSNNISMKDTRDGVVVKADGRTLLAKLVFAGSARLAECDLGIEELRAAFKKAHGEEASKGTLTYQLNEQDEDHLQLLDDADLALAKKHGSEPLKITSTEVDTRNVFDHASSELAKHGLDAPPTELKNLLDVLQFKPRRLVKCGLAPPKALKNTIKGEEQE
Ga0102802_1201767	Ga0102802_12017671	F041437	MIPFLIATSLTCSEAHELVDKMRAYNVEDETKAEMISIVKEETRNCWDEND*
Ga0102802_1206531	Ga0102802_12065311	F078612	EEVAQLGAGGNYFVHSSCIMQAPGIGSDATMSLVDNDVAKTVLHEFVYHGIKNLGFDESHVHVHVSNGGGHNDIVVIEWEIELNNQYYKALDTKQFFNHLFKNENWHNHVTSWMKGQGKAGVLKAAEAMKNLKEFALILPAHIDTKPQTNFDDATHTEEVKSLIDKWLGSKKPETDTITLYAGCSPTSTLTFTPTDFGAQVGASIITKSLNNDFLFDHAVEMEQTDCGTFKTKVLPKKGEEFGFYLFWKDNLTEWESVSDIGCTGPNTDKCPPGDVLASLASCTNAVQNPGFVSHNRVFDGTTLTYNWGTCENSCGTKPASCAAVTPQLGKSLVAFKKNPHYSHSPLGLAKPKTTTSFASSSVAFIG