3300007591: Marine microbial communities from the Southern Atlantic ocean - KN S15 DCM_B metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300007591
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125889 | Ga0102781
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S15 DCM_B metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 54411900
• Sequencing Scaffolds: 24
• Novel Protein Genes: 26
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	12
Not Available	9
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003068	Metagenome / Metatranscriptome	509	Y
F005533	Metagenome / Metatranscriptome	397	Y
F005911	Metagenome / Metatranscriptome	386	Y
F011082	Metatranscriptome	295	Y
F013133	Metagenome / Metatranscriptome	274	Y
F017306	Metagenome / Metatranscriptome	241	Y
F017397	Metagenome / Metatranscriptome	241	N
F018182	Metagenome / Metatranscriptome	236	N
F021310	Metatranscriptome	219	N
F022419	Metagenome / Metatranscriptome	214	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102781_1001112	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	864
Ga0102781_1001471	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	624
Ga0102781_1002050	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1228
Ga0102781_1002591	Not Available	1684
Ga0102781_1005641	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	519
Ga0102781_1006269	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	872
Ga0102781_1006404	All Organisms → Viruses → Predicted Viral	1121
Ga0102781_1012978	Not Available	518
Ga0102781_1146035	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	518
Ga0102781_1148921	Not Available	567

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102781_1001112	Ga0102781_10011121	F017397	YLYPWLVLFFVVAPIMATVIYFQATRLDHCHRTKYSSKMWATLGVDKDDQWCRLGPTVGLISDPIFVCYGVYMVLMSIASFNNPRIGANLIMFENITYFFSSQTAYFWLAIPCVMTMAPDPSALTYDAVTLTIGGLWVEVHMNYIYGHIAAWAPLENNEAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSVKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSIVVGLVRIGTAKKPFEEIERWLGVIMSFVFLSLTAVPSAAMFFHKRVTSIKAKPSLM
Ga0102781_1001471	Ga0102781_10014712	F018182	MTSNIQMKDTTDGVVVKADGRTLLAKLVFAGSARLAECDLGIDELRAAFKRAHGDEASKGTLTYQLNENDEDALQLVDDADVVLAKKHGSEPLKITSTEVDTRNVFDHASAELAKHGLDAPATELKKLLDVLQFAPRRLVKCGLAPPKALKKTLKGDEAEEPEDVYVVEMAEALAIEDEPKP
Ga0102781_1002050	Ga0102781_10020501	F021310	MTSNNIQMKDTTDGVVVKADGRTLLAKLVFAGSARLAECDLGIDELRAAFKRAHGEEASKGTLTYQLNENDDDALQLVDDADVALAKKHGSEPLKITSTEVDTRDVFDHASAELAKHGLDAPSTELKKLLDVLQFAPRRLVKCGLAPPKALKNTLKGDEAEEPEDVYVVEMAEALAIEDEPKPVTAGLAALQKTANEAAAALDKEADATLDDAALAAKLQAEEYGNHDVVLEAVTGQGIKLDSNTLHALLRMLHCRPARFVRLGLVEDIKAARQAFKLGGKACANEWFRNKGCH
Ga0102781_1002591	Ga0102781_10025912	F077350	LEVAVTDSALANQIQKTEADPNQADIQVLLEELESKLRGALDVLNPSVEAMVNNLHKAADEIRKDKDATTLWGTLNDLQVFLSLVQQICTSVGSQGPKVVEFDNALGDSLGALETVVVDAEDPEEVATFIEQSLVRSFDKWSDAEAELRKMADV*
Ga0102781_1005641	Ga0102781_10056411	F051931	KGWKYALHVLFVLMMTIMGTSAWVTFLPGTGVNKDPLPPTMREVEDHMELNAETQNPLCLVAFSISASEPRMMVLRNLVGKMMAWVVRRKFVFESQAMTQKVQLFEEESSLKHLHSPTRVRISEDNNMAYTERLKAFYGKYDPMKVDGVAVLLKKYKGKEEELMEELRRKYG
Ga0102781_1006269	Ga0102781_10062691	F021310	RTLLAKLVFAGSARLAECDLGIDELRAAFKRAHGDEASKGTLTYQLNENDEDALQLVDDADLALAKKHGSEPLKITSTEVDTRDVFDHAAAELAKHGLDAPSTELKKLLDVLQFAPRRLVKCGLAPPKALKNTLKGDEAEEPEDVYVVEMAEALSIEDEPKPVTTGLAALQQTANEAAAALDKEADATLDDAALAAKLQAEEYGNHDVVLEAVTGRGVKLDSNTLHALLRMLHCRPARFVRLGLVEDVKAARQAYKLGGKACANEWFRNKGCHGRGGKGWGRGLHGRGCH
Ga0102781_1006404	Ga0102781_10064041	F088935	MTSIGGLDVAYGARMQVVRTNVMCLALADTGLANATTVPKFILNTYKEALKGTVIEPDFLYIYEVADMDGSGYTTAAVANSLFNQDNSGDGTADVTALEVNGVLRDIRQVPLSKNSAFADTTAAHNSEGDAHTLHNYYDINGNLALE
Ga0102781_1012978	Ga0102781_10129781	F067833	TVVMANVFQHHMYVMDHLSSVMQVGDQTVLMAQMKV*
Ga0102781_1146035	Ga0102781_11460351	F025972	MWKLLLLTACAAAVELKQKMIIRNTGSEDLAVYFMGALHEGDLSLWDGSETLNDIVSPGQTTARYVRYNDSFAVRSGDLKWRVRLSLYKNDDAEQPYKVTFHNVMTDEKDQPVELKHHAAGYLWIEPNHHVTHSAAQGHEFALRD
Ga0102781_1148921	Ga0102781_11489211	F060971	GCDMDNAIPVYDWENWDELTAHHHSHLMHIVQMCTLKRDTEQIDYYADKFMAVK*
Ga0102781_1149548	Ga0102781_11495482	F028529	MRLSKFLTEDTETKTVNLTLTFDERSELLRHLEMFDENIDQLHPLVESVQDKLLGID*
Ga0102781_1149548	Ga0102781_11495483	F005533	MEYTHNELQLLTLISNINNQFYYIGEEDDKVAPIDVKKFTEHCVAFIDSLEVEK*
Ga0102781_1149828	Ga0102781_11498281	F041437	MIPFLIATSFTCSDANVLIDKMNSYNVEEDVRSEMIQVIKEETKECWDAND*
Ga0102781_1156291	Ga0102781_11562911	F003068	KDKIMKKILAIVSVLSLFTFSANAIDTSDVSVTAGISANSAVYGATGKETNRDESNAIRDVENESGVFTDSHMSGFLELNVGEFISLGYEHTPDSITTPQNKRVTNQNSETTVSADFNDLNIAYLKLNIPGGVYLKAGYVETDVDVKEKMASGSTYANVSTEGSLIGVGYSQALQGGVAIRLEGSYMELDDVMTSNGVAKDGATVANGGRNQIDVSDMEGLNGKIALTFTFG
Ga0102781_1160905	Ga0102781_11609051	F011082	IDDAEARITDLTATIEEATATSARLNTEIKNLGAEISKNQAALDKATAIRQKELAEFNGEEKDVLQSIGALKSAIAVLGKHHTELAQVPAEQLIHVAVLIEGQFRKHKDMVDKITSPAQKKAIAAFVQSPSDYFDAEPTFKQSYAPQSGAIFGILKQMKETFETNLENSQKEEMQSQTAYEDLKATKEAEIKAGSDQKDTKTQ
Ga0102781_1168398	Ga0102781_11683981	F023863	MAVRRILTVLALAGLTRAQNPWVNRRKNKDKDAPVAADPAAGDTDFSKLNDMVKNLQQAGAAGGAGGEDMFAGMGDMWESLMDSPEMEEMLANPELLKATIKNNPLINAIPGASEQVEALLQSDAFNDPAQLKQAMRQGVDAMKAVGSEFGSQLGAQMKLAQQNPEAFKAQMEAMMSQLAGG
Ga0102781_1168423	Ga0102781_11684231	F082819	ITYNINIHHRGLMSYTKNEVALETLISNVNSFFYYVGEDDDLIPFPRYEIRERLDKYVSQFMQSIEVEGDND*
Ga0102781_1173083	Ga0102781_11730831	F103401	LRDLDQHLCHKRVVSLVVVSILLITHILDIKSVNKTINTLFKN*
Ga0102781_1173644	Ga0102781_11736441	F005911	KKKRGSRIMCLKQRLLLLLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSLKAKIDGSDTNQARLGTVNEDDLEAPIDDVFHNGKFITLAVMVKKAVIIAADDPTATARAGVDTAYDQEKSGVLIKYADSDGNPIAPTETGLAGDTLVADVQLFVNLAGTPDATSNTPYADGEAFYYILMETNESGLTADDITVNLSQFPAGILSTNDGG
Ga0102781_1175261	Ga0102781_11752611	F103879	QGNQNFVIDSQTCYDTYAHEFAEQLGDRLSPAGYRTQLERVDSGLEQHNPESRLMTHFRRVLQKDKTTVGIGKSWVSTTRSGLSRIVDSRGALKRKREKETRLSLRNWSYRQELALDRRTMYWRERKKMRLYSLEYNLNNVTDTDHNQNSRVTRLYFRDALIESRQKRQLRVSLEPSTYDTFATRKLVVRARKPVAEPSELLAGDIISVWFDWAKTA*
Ga0102781_1175690	Ga0102781_11756901	F041790	RFSSSYATAAPKTDATISARIMSEGSIRRDYGLLLRVTDDWDDSFRYQPRAGYRCTVNTGRDGKADSTISVEVLREDGSRSTIAGLNAPAFTLEPGTWYAVSGSAIGNHIQCRIFGATGLLGGAGAFDDTYGDGYFATWNYKDDSGPHWWGDLRINDVPPPAARRLRGSR*
Ga0102781_1178204	Ga0102781_11782041	F013133	TISGDGWVVSTNLSDGSVNIEEAKYSWTVLEDVLTLTFGSQAEPYGLAWGLHRPSNNWFVSNPRDHSITNGVGIGLNKWGVGADLFYGGSTEDVLDEEGVVTEEGSQYWSSRFSYGLSFAGIDSKFGLSLNSNEAQLVDVSLGNSLFTTSFEYDLSEEADGAYWMRGVVTPPQAQGAFLLLGYNSDEVVTYGVG
Ga0102781_1179786	Ga0102781_11797861	F037241	LYKMRRLLLPLLLASTTAAKSTYWKEVEAKKRRPAAAAYCPKRCFTTEASGDEKREVADLTCCSSAQGTIFELAAFVAATTETAVRGFSLGFGYVLVKATLRAADSDEGPRSGHDFGPAYRFARMAGLGVACSFVGLSMFVPVGLRLGHRLA*
Ga0102781_1180843	Ga0102781_11808431	F022419	MSLRYAALLAPACAFTHPQQPRRVVVRRDYSSIDDVFDSVFGDPWSPFGLSRRDPWGMRRRSPLAQQFGQLKRLSQAFEEQLQRVDEDDFLVDTPLGQRRQLGTAKEDAPTKTDDSTSSLYEAPATKDCDAPCCDEAVAPAAPRGYAYSWSSSSVTQNGETRTTVRKNFKDADGGAKSFQERSLARDGKKLTETRTQGFGD
Ga0102781_1180854	Ga0102781_11808541	F017306	LSQRTEDHGIADAYLVVVSTASDELVHEFCAYSSAYGGPVRPDPVTGLRAEPTGGGRATVRWEWSENSFDLASPGASFERDVILEPLAWAGPVRKTPKTKPVTPAPKVDVSQELLAKDVAVKSEWRQNGCDDEWEIHVSHAATGTKLVWKGTSTAENQDIKKLRHVGADGMVRVDFAYYVGENGNNSSSDRSLFVKLGETGLEWVPKHVCSGRLYDGRCSGCK*
Ga0102781_1183877	Ga0102781_11838771	F056636	LWVEVHMNYIYGHIAAWAPLENNEAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSWKILFASKDASRWASFDSINAITTAKLWVLTMMVMLSSSVVVGLVRIGTAKKPFDEIERWLGVVMSFVFLSLTAVPSAAMFFHKRVTSIKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRAQNAGF*