3300007530: Human stool microbial communities from NIH, USA - visit 1, subject 809635352 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007530
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052691 | Ga0104842
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 809635352 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88872038
• Sequencing Scaffolds: 11
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F039198	Metagenome	164	Y
F044555	Metagenome / Metatranscriptome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F076064	Metagenome	118	N
F077319	Metagenome	117	N
F081354	Metagenome	114	Y
F089053	Metagenome	109	Y
F101192	Metagenome	102	N
F101355	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N
F105374	Metagenome	100	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104842_100083	Not Available	42707
Ga0104842_100330	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	16765
Ga0104842_100521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12925
Ga0104842_100685	Not Available	11069
Ga0104842_101280	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	7478
Ga0104842_106170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2582
Ga0104842_106965	All Organisms → cellular organisms → Bacteria	2380
Ga0104842_107805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2203
Ga0104842_113017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1592
Ga0104842_116726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1359
Ga0104842_121535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	684

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104842_100083	Ga0104842_10008341	F032312	MPKIKDYDEDLSAPKLLRERARDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIKGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0104842_100330	Ga0104842_10033016	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEETKRPDELYLRKLLPELTRLKLQPRHVVANDEAYYAAMKGVMLFTPEAEKLMLAEDYFSARRQIRLCAPDLKRLNETRRHPMPVLKLY*
Ga0104842_100521	Ga0104842_1005219	F081354	VPFLSAKKALDLVRENQQSSAHNFVKDFSSFLPESRRRSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMELPKNFENKKLPNPLR*
Ga0104842_100685	Ga0104842_10068519	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSISRISSNIMQITFTV*
Ga0104842_100685	Ga0104842_10068522	F101357	MNLNNITTTLKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF*
Ga0104842_100685	Ga0104842_10068524	F044555	MKTTNPSSRITISQNGNQILTCKVYKELNYILSMSNEEILELISGLDYIGNIPTVPDLKKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0104842_101280	Ga0104842_1012805	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0104842_106170	Ga0104842_1061702	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFSFLKFI*
Ga0104842_106965	Ga0104842_1069652	F089053	LFAFGSRNGCVVDECRTVKGCIRKWLYIFANGQLKLSTAEEVNVKNMEAFL*
Ga0104842_107805	Ga0104842_1078053	F077319	MQENTVCAANCTVQEKRGGQKIMLIRNATLQMSATERACMDVRVMNGCAWEMGAALVKGLYESEIDLRGDVLMPGRMLETPISAADEKALRLLCRRLYREGVRYFVTDCPADALLRTQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD*
Ga0104842_113017	Ga0104842_1130172	F047125	MDVVLLLMVLGVMLSGFWAADAMDHMRKEIIRQEGKRRGWWS*
Ga0104842_116726	Ga0104842_1167262	F039198	MKLTIAEIQGTKYVQIYLTEEERQKEETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNKNVC*
Ga0104842_121535	Ga0104842_1215351	F101192	MTYWGWLLVGIVLLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAAPTSFTPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG*