3300007497: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 404239096 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007497
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052752 | Ga0104979
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 404239096 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71681077
• Sequencing Scaffolds: 10
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F053092	Metagenome	141	N
F054111	Metagenome	140	N
F061927	Metagenome	131	N
F077404	Metagenome	117	N
F098763	Metagenome	103	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104979_100023	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	42919
Ga0104979_100045	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	31784
Ga0104979_100664	All Organisms → Viruses	8545
Ga0104979_101742	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4584
Ga0104979_101871	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4368
Ga0104979_105470	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2039
Ga0104979_109333	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1366
Ga0104979_111211	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1187
Ga0104979_126206	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	623
Ga0104979_131361	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	538

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104979_100023	Ga0104979_10002310	F027205	VASRLIVSADDILKAVKESEEFERNALSEARKRDRAAGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0104979_100023	Ga0104979_10002313	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLLDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0104979_100023	Ga0104979_10002314	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPVYIYNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0104979_100023	Ga0104979_10002317	F018385	MAEYVNQWGPYKELSIENDRDPVLDDPIIYGVNVKHFILTVYSPEGRVSKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0104979_100023	Ga0104979_1000239	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKELFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREKDHWYTFRMSDAQKSKFTRHTITNEKGHQSYDWVLKNVEWAADMIRYF*
Ga0104979_100045	Ga0104979_10004522	F077404	MAQQIIITHKLVAAALSLKEPTQIGNTKNPFAMNILKTAFAFFFALCFMMGANSYAQTTNRINAEASKRELKRNAIYIPPALEEYADTILLHQRFIVENKGNYLYTPFTKDNEPSIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDYDRVELSYFESYGRQAALETANTWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLSLYFLMIDSVALNFDTKVLPYIKGVFHFNRIQ*
Ga0104979_100664	Ga0104979_1006642	F105377	VRAEVRDFNRLPLLTPEEAFERAREMGWNRPLFDLDYQVRGLGDWKTIEALLRQYDVEDAVIASFGLKSFEEILDVIAMLHERGWHIWQTSAKVYVSGELRTVQAIQARYRGD*
Ga0104979_101742	Ga0104979_1017422	F040149	VADEGAEELRGEVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWHYDSEDAIHDFIYDISVPKGHTLTAVRERETVVMQLFNIHRMF*
Ga0104979_101871	Ga0104979_1018712	F098763	MDRRTSLRVLSTVLYFTTKLFKAVVRTTISYNPSDEVEGKGGMNAIPTAVDE*
Ga0104979_105470	Ga0104979_1054703	F053092	MQSDQGLILCLTHALLVLRALVLEPAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0104979_109333	Ga0104979_1093332	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKKVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0104979_111211	Ga0104979_1112113	F061927	MKNSIFILSAMFILGACSSDSAQKATEKIKNAYSDGLRKTFIEEGVKSCIKNSGLKESEAREYCECAMNKLNESLSNDEIIDISMDNPPKDLDERVDKAIDSCIGE*
Ga0104979_126206	Ga0104979_1262062	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDGDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYQSLKVDC*
Ga0104979_131361	Ga0104979_1313611	F054111	MVFKNLEKASMDKPLDNITHEVFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSIVDRDLFLNILDKEILFLI*