3300007358: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159551223 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007358
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052690 | Ga0104765
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159551223 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 139591620
• Sequencing Scaffolds: 18
• Novel Protein Genes: 21
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	2
Not Available	4
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F046433	Metagenome	151	N
F051211	Metagenome	144	N
F054110	Metagenome	140	N
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F077405	Metagenome	117	N
F078842	Metagenome	116	N
F080164	Metagenome	115	N
F084362	Metagenome	112	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F094007	Metagenome	106	N
F095633	Metagenome	105	N
F103430	Metagenome	101	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104765_100107	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	53004
Ga0104765_100297	Not Available	35341
Ga0104765_101137	All Organisms → cellular organisms → Bacteria	17773
Ga0104765_101883	All Organisms → cellular organisms → Bacteria	12750
Ga0104765_102867	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	9293
Ga0104765_103544	Not Available	7770
Ga0104765_104203	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6655
Ga0104765_106210	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	4580
Ga0104765_106260	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4552
Ga0104765_106294	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	4529
Ga0104765_107157	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	3955
Ga0104765_107849	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3577
Ga0104765_111670	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2279
Ga0104765_113521	All Organisms → cellular organisms → Bacteria	1930
Ga0104765_113584	All Organisms → Viruses → Predicted Viral	1918
Ga0104765_116369	Not Available	1538
Ga0104765_119714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1239
Ga0104765_130385	Not Available	758

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104765_100107	Ga0104765_10010750	F068942	MIRKILSLPTLALCFTLCTALFAGCGEKIEGFVTEVRWSNVKNPEYGEYINIRLKAEGETFTTVGDHSWISFSNDVSTLDTFTRHDIPKVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFKFSVSVTPPGTYIFKVHQPALPAKAQ*
Ga0104765_100297	Ga0104765_10029713	F084362	MYLMNCAFTVRWSDEKNKPHAKTYATESDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKPSETEAGQKGFWWEK*
Ga0104765_100297	Ga0104765_10029742	F103430	MKLITIKAFIGSNNKTKKLEVDKIISTVNANHEAFTLQYPVIGCWKGEVEETAVLYLSGERQKVMNTLSELKEVLDQETIAYQIENDLQLI*
Ga0104765_101137	Ga0104765_10113711	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASRIPAYIKRVSIFLAVLTAFLLALVVQKIRVLFGGITASVFAIMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAAAVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0104765_101883	Ga0104765_10188310	F089055	LKVEKMNSTPECVTKTPEIKAREKEAREKLAVIFSDAEQRDNSKVNPELGKTAFDVANIPNNAAVDLCNKALGSYGKSLDRIKNSPLEAVWAIGTSLQHLRDEYKTEESCG*
Ga0104765_102867	Ga0104765_1028671	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFPFIVEQHYHSIPGIVPEGTTYRVPVIPRSVEDKTKKEYNDMDLGKEAHLVFRATVHGDTINRRRKELDAIALQLGRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLSWEIKLRIRDYFGRVKHRSSGIVTLDCEDTQSKTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPSKSVQQYYTPNGYERESTYFTALWPVPDYKYNEMEW*
Ga0104765_103544	Ga0104765_1035441	F103432	MKKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAEVYDGKAFEHVVSTTAAGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAEFNADLDALFHESIGIAPRLFGVRELSVVGIDRKGKPRDLGNYSCPLLQGKRKNVNYRTREGVFHEHYEAASVDTFSVKSDWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY*
Ga0104765_103544	Ga0104765_1035442	F080164	MRPISFVLSLLLGVIGLTLCAAPQVTLRERANAFPLITEKDASEIDAPYAWRMPVVPLRLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVHRDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGGRQTVDEQVTLHLPGFEKTEKPLHYKGQTGQLVLCEYYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS*
Ga0104765_104203	Ga0104765_10420310	F032313	MACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSITKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK*
Ga0104765_104203	Ga0104765_1042039	F032313	MNFMSNCNWRAQSVSIESFKIVLMYRFLILLFALTLMACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMLTSKISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWTVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0104765_106210	Ga0104765_1062102	F046433	MSELSASLDVLDVLNPVTPPDLTLQAQDTSRNNPVTYVVDDGYMGTRTSDPCFRKMRRETTEYKALNEFLYFMKMVEPYVPDRIKDNARELRNELVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQVRERISVFEAYNNPGAHKVSVLVMAASSNYIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGVHSSTDSAFGCEVDDIAYRAIEGGILKGEGIDELSLPALANIVRPYRNGEDFDGLSRFRQLLEKG*
Ga0104765_106260	Ga0104765_1062602	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLQRKIFRSNPESFYTAIDIWLATIRVNSSPNAFNLIETVYYSHLNNLIATR*
Ga0104765_106294	Ga0104765_1062943	F095633	MRNYENFTEIGRGEGLTEGELRTMGALAMKATEELKKTTIRKEAVLLGSVPFGSWDEFAKAAQEMAAHSYEPIPVKINTKRLIATASLDDGGEMSVEERSVPEEVFIDLSRTRCVVDADRSHKSYKFTCPVLEKFPDGELYPIREVYVISAIDVNGSQEVDFKIIYGNLN*
Ga0104765_107157	Ga0104765_1071575	F033081	MAWLFKKGMPQDPKPVFVWPRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLLVPGLNQSVVSLLTRGLETFLPTRWATVTAWTVGMAGVFLMGDLTNYTPSQMFLHKIKATRFEVYNIILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHIANIWYSFAAGIALSVTGFGFLLVYLWRYRKYRSQIIATAAATTVHALYNAIALSLIAVVLAIDIAKLL*
Ga0104765_107849	Ga0104765_1078493	F078842	MIISSIYKIADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEVKKTYDEALREFDKLVIPEDDILRAASECGIEMNRNIAEVDRSELSKKLREVQISPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLNCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDVYEVNS*
Ga0104765_111670	Ga0104765_1116703	F046433	MIELPPSPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMESRCKTTEYEAINDFVQFIEMTKHYLPDYMEDCAKELIDELAFLGVPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLILSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIISGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGATYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEKINELSLPALANIVRPYRNGEDFDGLSRFRQLLERE*
Ga0104765_113521	Ga0104765_1135212	F094007	MKSKTVEVLELARPSRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYGDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA*
Ga0104765_113584	Ga0104765_1135843	F054110	VLDVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKFDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD*
Ga0104765_116369	Ga0104765_1163691	F085820	MRSTFYLFAMLFLATTFFSCETVEPSPRATWGEIVNPIEAFMYPRDLKVVAAREEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPPNPDHLKQRIVLRLADGTEIEKELSEKRKK*
Ga0104765_119714	Ga0104765_1197143	F077405	ATTSRPRPWQGRALPTELFPHLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK*
Ga0104765_130385	Ga0104765_1303851	F080164	PQVTLRERANAFPLITEKDESEIDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLLYKGQEGRLVLCEYYESHRGDLLLNAANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEMELEDGTKLSTSLQHYDEQTSILDHPDRS*