3300007301: Hydrothermal vent microbial communities from Teddy Bear hydrothermal vent, East Pacific Rise - large volume pump, sample 5

Overview

Basic Information

• IMG/M Taxon OID: 3300007301
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116043 | Gp0118654 | Ga0079920
• Sample Name: Hydrothermal vent microbial communities from Teddy Bear hydrothermal vent, East Pacific Rise - large volume pump, sample 5
• Sequencing Status: Permanent Draft
• Sequencing Center: Bigelow Laboratory Single Cell Genomics Center (SCGC)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 249394076
• Sequencing Scaffolds: 42
• Novel Protein Genes: 44
• Associated Families: 42

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1
Not Available	25
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	5
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Vent Microbial Communities From Teddy Bear Hydrothermal Vent, East Pacific Rise
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Fluid → Hydrothermal Vent Microbial Communities From Teddy Bear Hydrothermal Vent, East Pacific Rise

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Teddy Bear Hydrothermal Vent, East Pacific Rise
• Coordinates
  • Lat. (^o): 9.847222
  • Long. (^o): -104.2975
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000057	Metagenome / Metatranscriptome	3033	Y
F000615	Metagenome / Metatranscriptome	984	Y
F002030	Metagenome	601	Y
F002348	Metagenome / Metatranscriptome	568	Y
F002715	Metagenome / Metatranscriptome	535	Y
F002745	Metagenome	533	Y
F003285	Metagenome / Metatranscriptome	496	Y
F004643	Metagenome / Metatranscriptome	429	Y
F005610	Metagenome / Metatranscriptome	395	Y
F006198	Metagenome / Metatranscriptome	379	Y
F008155	Metagenome / Metatranscriptome	338	Y
F008692	Metagenome / Metatranscriptome	329	Y
F009692	Metagenome / Metatranscriptome	314	Y
F010197	Metagenome	307	Y
F013570	Metagenome / Metatranscriptome	270	N
F016878	Metagenome	244	Y
F017326	Metagenome / Metatranscriptome	241	N
F020372	Metagenome / Metatranscriptome	224	Y
F020602	Metagenome / Metatranscriptome	223	N
F022430	Metagenome / Metatranscriptome	214	Y
F022526	Metagenome	214	Y
F023622	Metagenome / Metatranscriptome	209	Y
F023950	Metagenome	208	Y
F024888	Metagenome	204	Y
F033215	Metagenome / Metatranscriptome	178	Y
F043455	Metagenome	156	Y
F045148	Metagenome	153	Y
F045157	Metagenome / Metatranscriptome	153	Y
F049035	Metagenome	147	Y
F050430	Metagenome / Metatranscriptome	145	N
F052659	Metagenome / Metatranscriptome	142	N
F055187	Metagenome / Metatranscriptome	139	N
F057444	Metagenome	136	N
F061282	Metagenome / Metatranscriptome	132	N
F065115	Metagenome / Metatranscriptome	128	Y
F066848	Metagenome / Metatranscriptome	126	N
F068126	Metagenome	125	Y
F077397	Metagenome / Metatranscriptome	117	Y
F079636	Metagenome	115	Y
F087323	Metagenome / Metatranscriptome	110	Y
F101351	Metagenome / Metatranscriptome	102	N
F101844	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079920_1005854	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1280
Ga0079920_1009239	Not Available	1113
Ga0079920_1012066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1025
Ga0079920_1013622	Not Available	986
Ga0079920_1015406	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	947
Ga0079920_1016025	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	937
Ga0079920_1021396	Not Available	856
Ga0079920_1024945	All Organisms → cellular organisms → Archaea	816
Ga0079920_1027230	Not Available	793
Ga0079920_1030324	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	767
Ga0079920_1033628	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	742
Ga0079920_1033707	Not Available	742
Ga0079920_1033953	All Organisms → cellular organisms → Bacteria	740
Ga0079920_1034320	Not Available	737
Ga0079920_1036369	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon	724
Ga0079920_1036918	Not Available	720
Ga0079920_1037250	Not Available	718
Ga0079920_1040097	Not Available	702
Ga0079920_1040470	Not Available	700
Ga0079920_1043388	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	683
Ga0079920_1044692	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	677
Ga0079920_1045329	Not Available	674
Ga0079920_1051617	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264	646
Ga0079920_1051622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	646
Ga0079920_1053788	Not Available	637
Ga0079920_1057799	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264	622
Ga0079920_1069650	Not Available	585
Ga0079920_1071222	Not Available	581
Ga0079920_1071311	Not Available	580
Ga0079920_1078642	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	562
Ga0079920_1080610	Not Available	558
Ga0079920_1081935	Not Available	555
Ga0079920_1083647	All Organisms → cellular organisms → Bacteria	551
Ga0079920_1089193	Not Available	540
Ga0079920_1090472	Not Available	537
Ga0079920_1090482	Not Available	537
Ga0079920_1102931	Not Available	515
Ga0079920_1105040	Not Available	511
Ga0079920_1109488	All Organisms → cellular organisms → Archaea	504
Ga0079920_1109702	Not Available	504
Ga0079920_1109732	Not Available	504
Ga0079920_1110504	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079920_1005854	Ga0079920_10058541	F020602	MGIKYISGFRGLDHAKQHLRRSVHLGSALTSGYTVLNPAEAFDQQACFVYLNGALLKEGTSGAGGDYVLSGSNTVTFNVAVATTDAIEVISYAFQNPTLPATMTEVDHTITSANASYHSTSF
Ga0079920_1009239	Ga0079920_10092393	F002348	MKPNEKWMKYGGWLLSLLSILIGASFLWPHVHVALLGIAFIYLGIRIFNFSTFDEYKEKRMKLLYKLLK*
Ga0079920_1012066	Ga0079920_10120663	F010197	YGLNLFLLPNTTHELKAFTIKHDFAQHMQKVFSRQDGILFSFEEV*
Ga0079920_1013622	Ga0079920_10136221	F068126	MAVALFLSGCAKNVADKNNDLGSGDKSNLPISLTSLIEHAEYCKAIYD
Ga0079920_1015406	Ga0079920_10154062	F052659	MLLSGNPGTETRSAVFIDGRLISSLPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVFLWAEV*
Ga0079920_1016025	Ga0079920_10160252	F017326	MNDYEKVKIEINESVTSDNFKEHLRKNYHNSYDEYESDTRHIDLDVYYEKNSIPINELVPKGMTIKEYFGKEQRLLREENISYVKFD*
Ga0079920_1016025	Ga0079920_10160253	F043455	MNMSMRKETVEEYLRRGKTITKIPQVLDTIGSIWNQQGYEVNKDRYGHKKFGIRLQDWKSMQPDIRFDTEDDDRKYWNKLNKKCD
Ga0079920_1021396	Ga0079920_10213962	F050430	MDKKLKENLIVGIKIVGMLFFLIVLITTLVWPGGVDTLVN
Ga0079920_1024945	Ga0079920_10249452	F065115	MLSINRIFIGFFLIGVLYAVGDINPLIGGLAVGLLFGLTDYTKESR*
Ga0079920_1027230	Ga0079920_10272302	F002715	MPEEELQSVKLEVGLLKNEVEVRGRQIDTLLSKLDHTADKLQELTVEIRTLNTRQEDYLRTNTSMSNEFKILHTRIGDLHDKLSSNNRRIEERLDHLDQYKSKLMGMIIVVGGVVGTIVATAISIFLKE*
Ga0079920_1030324	Ga0079920_10303241	F049035	MANWDSRELQTPPAIKKIGQNAQNVINNLDILLKIVKGGAEVAKMFLLLSNPAGAIIKLAANEIIKAANDFKEIGVFYLFINPNDEGYGNQTIRELGLAIKREGLTGLYQFKPTVFSVGGEEGGVKTHTVGTAYQRSLDIADLDSNYRDSNNKSKSDPKFIPPIPIFDDPPEWELGGYDPSTWTGHAPVTSIPLANGVFPPEMRPSKVLQIMSESFDDEGDVSTFEVQAGWKNVSRKAKI
Ga0079920_1033628	Ga0079920_10336281	F087323	KIEVFTLTMQSTGGNLLQDLGDHADFNGKRERGISATFLRARSEDGTQSLFSISSKGLSIHAHVSQKKMGWIRLSL*
Ga0079920_1033707	Ga0079920_10337072	F022430	MSDYIYENRQLALWAEYDDLKGRVSFEAFMERHVNVNGYIVNLLKKFGTVSAEIDRSESAKRFAEMDLVQLGD*
Ga0079920_1033953	Ga0079920_10339531	F003285	MPEQESIHQLQTEIQTLKIKDEFRTKELDALMEKLSDTSSKLNALSENIGRLLAGQDLHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLEKWRWITIGIATAIAWLLTNIIPKFLSN*
Ga0079920_1034320	Ga0079920_10343202	F101351	MDKPAFSETVPNELKELGYVPPIIKSYDKNGINVWLDKRKKWYDVPFWQFTMDGVQWMVLDERHGSASQFYSHYKLARGHVICTGLGFGTREQWLASKPEVTKITVLEKFKEVIDYHKDIGTKWPDKIEIINCDANDYKGSCDFLSIDHYEYDDVLRILDSIKKVCNNITCECAWFWMLEPWIRLGYI
Ga0079920_1036369	Ga0079920_10363691	F024888	PDEFAQERGFDNWMEYAAWSRHTGGDYNMMEMMLKSKWKEQDPEEFARQKKIESDQRTREHSYISLPPEAWPTSFIGNKKKKWQPVHKSNFTAEELEVIYDERGVGGEPVEYRW*
Ga0079920_1036918	Ga0079920_10369181	F002745	STSMFKRIWPDTIRATVFHTTDLAGLERLKKLEGGKKSISAFFSMMSRYMETGVATGDGVHVVVEMDADVLVSARDDIMSEVDKQGRRWVMMSWFEYQTRERSKFGKIEKDLNTLIANLVKKHIPKDKEIQQTKHFGKDSGAVFDIWGNMKRHLKGDGQKLRLVIKDYFDGVERILKKNSEVMGNIIYGYAKGKRMTDNSWDEQIVNNIEVKKVHVISEKDDQEGAEWRRDEIKAIGNW
Ga0079920_1037250	Ga0079920_10372501	F009692	HWGSFATQIENEFHRNAITIADDTHNLLLQSSDLTGNTTAVFHLYVSVRHSTATNDAYQVANFIVRAEKAVPADCYLHTIADGGNIGTEFDAVDENAYSTYANVTDGNVGVGVTADANGWYVYLANRSSHSVVAGFKAIAITN*
Ga0079920_1040097	Ga0079920_10400971	F033215	TVLERDALSVNETLVLVMVQVSATAKLPPRLRVVFEVLNKAPLANVAPIGRLRVPPVEERVPAVALIPPLRDKLALPVTIFSPAASRVTGCATLRLDILSSSVKAKLARSSVPTDREALSSIVEFAAKRRVVELSGNTPPKFCVPDTSRMPPESVSALAFVVNVVFFVLRVAPVSDKAFCSTNVVSGSEILVPDGALAPETRVIVPPEEFSDALSVNANAPERVRLPAPVSRA
Ga0079920_1040470	Ga0079920_10404701	F009692	GRYRVLTVPSSSTVTLQTVDNASLAFDDNGTGITFIRVFSKSVPNLTVTNHVMLFLNGMHLVKDTDYYIDQQSVTIDSTVNLLENAVVAVRHFGSFVTQITGEVQRNGITITDDTHNLLLSSTDLTGNTTAVFQLWVSVRHVIATNDAYRTTHLFVRAEKGQASDCYLHRAGDAGNIGTDLQIVETGSYSTYANVSDGNIGVGVTADANGWYVYLSNRSSHSIVAGFKAMAI
Ga0079920_1043388	Ga0079920_10433881	F101844	FYGDTASSVLLWDESDDQLEFGNAAMTISDARTSVTQSLTGLTIDMYNKLDTGSSNDRIGAAISTYGDTNAYTIRDSVGIRAMSRQSTGAEVTRLNTPLHAVLDLANTAIANNSGTTLSGAYGLAIDHDDTIATRTGQPTAFISFGEMYVGGTESIETAYLFDIFPNGKTGDATYGTAADVAFYNDGAQYATTRDTMLLNSTDGGPASDAGDHILMEPDPFDAILLE
Ga0079920_1044692	Ga0079920_10446922	F023622	MKTFKEFQGKIPTQIVEQVYFKIRIPDMSTMFMKATSESAVKLDMRKKLKPDVVKEVTIERVTKAEMRKIYRAMGQGKEDEKEKESAEEK*
Ga0079920_1045329	Ga0079920_10453292	F045148	MDDTTVTDWVDVTAECGQCATEDTVSVPTGQYREWKNGANISLVFGNLSPNQRDILIGADTSRPMPFYLCEVCWNITFDAN*
Ga0079920_1051617	Ga0079920_10516172	F013570	MELEKIKKKREELMTNYNSLVDKRIELEKQLEITNTDILTMRGAILLCNEFVEEEEKPEPKPLFPEKEVVVNDLDKEKDGRQKNK*
Ga0079920_1051622	Ga0079920_10516221	F066848	MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDSVLRTVLKGARQIAADQRLPVDPVAKGAGSEPELNLVA*
Ga0079920_1053788	Ga0079920_10537881	F016878	MKSFKGYLKERFQDWKSGSAPAWTESLSTMLFDLPRAGLKDLKIPLSSSIMNRVWPKSVRSKAFHVTDLDGVYKLTKLGKTKSISAFYNMDDFIISSGIKTNGGYVVELEGDVLAASPDDISSQPDKSGRRWITFSSLMNPSTAADPGLGGKTQLKGIETSLQNLLVKILQDNGKDID
Ga0079920_1057799	Ga0079920_10577992	F061282	VLYEDSPTTAMGGGNIAVRGIPLLKKPPKGLVMKRFGGIDVFAIDPTYFQKSRLGKKKYTRYSGYVGEDEAGEYIRAFARKYPKKPIIVMDSQTGCMQYLRHGS*
Ga0079920_1069650	Ga0079920_10696501	F022526	MNMKKVNTKTVRAKEYRDFSKGGTPQERHMENVERGYVTTDYMTAVAAAAVRYEVIDGKRFKVVTL*
Ga0079920_1071222	Ga0079920_10712222	F077397	NTRTVANSGAFTGLEWNVLVTKIMWATIGCQVGIEWDGSTAEKYIGEFGGNGSWSLPGNEWPGIPINATGDSSEVLGDIQFSTADQSGTDSYTIIMELKKQAPGYDVPAYEENASLGYRVDYVLGNFT*
Ga0079920_1071311	Ga0079920_10713112	F005610	VRSFKEYLTEADREEIRDAKKVFVALQAMYSKLPKFPLVFKNLQTSKNLDKRGGGYLQTSKLKGGKFIFVDKMVIDDSGLGSFEPDYAVVHEFAHAILAVTKGDLGHNKKHADLTYKLAQKFGLA*
Ga0079920_1078642	Ga0079920_10786421	F008692	MSKKKRKQTKEEMYMPDSEEEFQADLDAQDMRYLQYCREQEEMYNDPVMNWSGLR*
Ga0079920_1080610	Ga0079920_10806101	F000615	IVSGLERPENIMCRLRLFYECSDGSMGFAEHVMRYEDDIVGFIKHWKTGGRMVITEHIDLV*
Ga0079920_1081935	Ga0079920_10819352	F006198	MEVELDVECDNCPATYTMVYDSDDIQSQDQEEHAFHCAFCGILMEPYYNEEEI*
Ga0079920_1083647	Ga0079920_10836471	F045157	VIKAGIAKSGTSSGREGIRNKISHLKKTGHLREAQSALMDMINLKSQQKR*
Ga0079920_1089193	Ga0079920_10891932	F008155	MNGRFPSCSATLVYIHAMKKQIEEEVTSKYLKRIEHLVAANNELMYELEQRELELITVESEMITVEKECYGRGV*
Ga0079920_1090472	Ga0079920_10904722	F023950	MTKKTRGATVKYKMYGKFNYEKKFETVKAAKGFFWGYVVKTPNITGELIIH*
Ga0079920_1090482	Ga0079920_10904821	F055187	MRVVNGNVIKSPADLVGLKPFKDAKLLRHEAIERMKRHMERKLKQSKEEARLAQPYVRDADAPSF
Ga0079920_1102931	Ga0079920_11029311	F079636	VATPGETQVLGFDLTANDSLVMPVRKEYEAYDDPVLHREQKQGFYGHANLGFACLDSRMLGMGVIDRS*
Ga0079920_1105040	Ga0079920_11050402	F004643	LNELAKYYDNEFWEENEWVSCFECDKIFEDLEKLYEHQDLHIEEENQKK*
Ga0079920_1105207	Ga0079920_11052071	F000057	MAQKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEIIEAESHQGSLKEAFELTKDEIKILKKLIKELYAIAEPTRIKGYTDEQM
Ga0079920_1109488	Ga0079920_11094882	F057444	MSTTKQADKKQPEWENMVGGKEPPEQLKEYIEKMIEFNNTAKEILKDTRDWLVTNGNSSR
Ga0079920_1109702	Ga0079920_11097022	F002030	MIGFLIFGLVVLSTVCLWLLIEERKSPKFLIWFIPVLLVIVTSTYVTYTSPLGFPKFGTPEKGMYLRHYIDEPNWIYLWVLSRKNVPMSYQLVYTRKKHDALEGVKGKAEEGKFMVLGEDTSQGAGDELDGDIGGERGGGYT
Ga0079920_1109732	Ga0079920_11097322	F020372	MTDKKNLATIKIYIDGKEMLYSHQNIIGAINSFLPYLTNDDLDELMLRFHTLKNHRRQKEYLAMLEAKKHSWPYPDTINK*
Ga0079920_1110504	Ga0079920_11105041	F006198	MEVELDVECNNCGVNYKMIYDSSDMRYDEPAFHCAFCGILMEPYYDEFFEEDKDE*