Sample 3300007213

Basic Information
IMG/M Taxon OID	3300007213 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0119820 \| Ga0079255
Sample Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 NT10 metaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114292 | Gp0119820 | Ga0079255

Sample Name

Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 NT10 metaT (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	104175338
Sequencing Scaffolds	20
Novel Protein Genes	22
Associated Families	14

Dataset Contents

Total Genome Size

104175338

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Eukaryota → Sar	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Southern Atlantic ocean

Coordinates

Lat. (^o)

-28.2362

Long. (^o)

-38.4949

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F000121	Metatranscriptome	2072	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000513	Metatranscriptome	1062	Y
F001926	Metagenome / Metatranscriptome	616	Y
F003495	Metagenome / Metatranscriptome	483	Y
F006783	Metagenome / Metatranscriptome	364	Y
F013645	Metagenome / Metatranscriptome	269	Y
F021307	Metagenome / Metatranscriptome	219	Y
F029285	Metagenome / Metatranscriptome	189	Y
F053827	Metatranscriptome	140	N

Scaffold	Taxonomy	Length	IMG/M Link
Ga0079255_1000115	Not Available	618	Open in IMG/M
Ga0079255_1000196	Not Available	602	Open in IMG/M
Ga0079255_1001401	All Organisms → cellular organisms → Eukaryota → Sar	502	Open in IMG/M
Ga0079255_1013259	Not Available	570	Open in IMG/M
Ga0079255_1015283	Not Available	797	Open in IMG/M
Ga0079255_1017767	Not Available	994	Open in IMG/M
Ga0079255_1034447	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	685	Open in IMG/M
Ga0079255_1115213	Not Available	746	Open in IMG/M
Ga0079255_1145227	All Organisms → cellular organisms → Eukaryota → Sar	554	Open in IMG/M
Ga0079255_1146094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1088	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0079255_1000115

Not Available

618

Open in IMG/M

Ga0079255_1000196

Not Available

602

Open in IMG/M

Ga0079255_1001401

All Organisms → cellular organisms → Eukaryota → Sar

502

Open in IMG/M

Ga0079255_1013259

Not Available

570

Open in IMG/M

Ga0079255_1015283

Not Available

797

Open in IMG/M

Ga0079255_1017767

Not Available

994

Open in IMG/M

Ga0079255_1034447

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium

685

Open in IMG/M

Ga0079255_1115213

Not Available

746

Open in IMG/M

Ga0079255_1145227

All Organisms → cellular organisms → Eukaryota → Sar

554

Open in IMG/M

Ga0079255_1146094

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria

1088

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079255_1000115	Ga0079255_10001151	F006783	FILDMNLIFPGDGTMNFDQNVKVAKIEIKCPTEKIAETATGVTFPNIAATGDCMGDALRKQKKDVSKFTIDINSDGSLTFHSDGWPDLKLTKKTVAVAALSGHYEGQVPFILDMNLIFPGDGTMNFDQNVKVAKIEIKCPTEKIAETATGVTFPNIAATGDCMGDALRKQKKDVSKFTIDINSDGSLTFHSDGWPDLKLTKKTVAV
Ga0079255_1000196	Ga0079255_10001961	F006783	LSGHYEGQVPFILDMNLIFPGDGTMNFDQNVKVAKIEIKCPTEKIAETATGVTFPNIAATGDCMGDALRKQKKDVTKFTIDINSDGSLTFHSDGWPDLKLTKKTVAVAALSGHYEGQVPFILDMNLIFPGDGTMNFDQNVKVAKIEIKCPTEKIAETASGVTFPNIAATGDCMGDALRKQKKDVTKFTIDINSDGSLTFH
Ga0079255_1001401	Ga0079255_10014012	F001926	MEKLRDVKDEDIPARPNPKIRIATLDGDKLMKEVLKGGYNVQPIPPPNSETKERIRRKYERKRTKREKLFTLGYTTSGEP*
Ga0079255_1013259	Ga0079255_10132591	F056191	VCNARVGHALTAEMSKTFPSGGSMHARVKLEGIDGRAPQERGACG
Ga0079255_1015283	Ga0079255_10152831	F082867	NITVQYRVVKPLTFTSNSLLLAVNPTLTELSNTLATIYRQYRVTELSFTFQCSDVAGQYALAMQYVPQVGSVPSTLPTQLSEFEGPAVGYCETGRGREYTYRVPSHVLNAMGLNYYSTRITTTPSQDPDVLTQGLMVFLTSTPATPIIAYMHVKYEFQTLEDPSFLAKLMNGEERNDKEAIVVPRMTKQGGELWN*
Ga0079255_1017272	Ga0079255_10172721	F000237	ATHLSDLTLTIGANIFWSLLNFTYKTYYIIFTNKHLNTDQLTRLMMLHYFTPYYLYLVQLHVMFCHESDTDSGESTIEDKSGTYVSWFYDAFLKEIQDAFSQFVFVYFAMHHFHASTVNYHFFERNISELDEIRFYGVAPHYFRPLMGLLTITPTHYEGLLMGMFGLLAALPLLNSFYNSGLRYVPVIPMQSSFVQTSAFILYMLSMYCAASMLPCGRYYYDPEGGYVGNPVKFSYQYAYLYMA
Ga0079255_1017767	Ga0079255_10177671	F082867	MPKKGSRSRRVHHINDINHNDTNITVQYKVVKPLLFAGSNTLILPINPSLTDLSTTLATIYRQYRVTELSFTFQCSDVAGPYALAMQYVPQLGASPSTVPTQLNEFEGPAVGYCETGRGREYTYRVPSRVLNAMGLNYYSTRVTTVPAQDPDVVTQGRMIFLTSTADSPIVAYMHVQYEFQTLEDPSFLAKLMHTDEKKDTDTLVVPRMNKTRGGELWH*
Ga0079255_1034447	Ga0079255_10344471	F001926	VRHEDIPDINNPKTMKAVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERITRRYERKRIKIEKLFTLGYTTSGDP*
Ga0079255_1115213	Ga0079255_11152132	F029285	MKNKADYSKYECPYSHLEKESGHELHGPEGYQDVYGVWCACGFRAPVFYLEPNELGLKLKKETDVATCA*
Ga0079255_1145227	Ga0079255_11452271	F000513	LNDDDALELFKKTLPSSASSFVQVKVTSGAMRQKALSMLRSVRRSQKADPRLDFIELAMHGGKMGFDKIIKMIDDLVVELKAEQGVDDDKKSYCLAEFDKAEDKLKGLNLDVSDLEKAIADAEETIATLKSEIEALEDGIKKLDESVAEATTTRKEEHEDYVSTLAANNAAKDLLGFAKNRLNK
Ga0079255_1146094	Ga0079255_11460941	F021307	MNQILYENRCKCNEEISIIRKRKLTTRSEGKPFQYPKPNEILSKTFQIKYEKKLSSTARVILNSFHNKYIYYAIDDILYLLKSNKRERE
Ga0079255_1176984	Ga0079255_11769841	F098751	CLCPIAHNSQLNLIDGFSHSQVEINLFHDTGIVLITGIFIFVAILGGSLVFNKLRDRKMLEDQALETI*
Ga0079255_1215154	Ga0079255_12151541	F082867	LLIKSSNSNLIERMPKKNRSRRVHHINDINHNDTNITVQYRVVKPLTFSSNSLVLTVNESLTDLSTTLATIYRQYRVTELSFTFQCSDVAGAYALAMQYVPQIGTNPNNLPTTLEEFEGPAVGYCETGRGREYTYRVPSHVLNAMGLNYYSTRRSVSPPQDPDALTQGLMIFLTSTPATPIIAFMHVKYEFQTLEDPSFLANLFDKNKETDTLVVPRMTKQSPGGERKGAWN*
Ga0079255_1219748	Ga0079255_12197481	F000121	MSARAHDPGYTESDTKGAKPFTAADATGATMEITFKKRPFGILRYAPGANQNDAMVMEIIPQSRYPGDPQGQAFAAGLKSGMVVKSINGADMSGKSFAAIMDTLDDEVMDQRMSQHFYASQKEPRAAEPADTPMTIVYQAGAGADIQWPEMKEDIWEGFSR*
Ga0079255_1222617	Ga0079255_12226171	F063612	VAGGSPADNAALVAAESGLKTPRRGTGSKEDVYSSAL*
Ga0079255_1229431	Ga0079255_12294311	F082867	PMPRKRSSRRVHHINDINHNDTNITVQYRVVKPLTFTSNTLLLTVNPTLTDLSNTLATIYRQYRVTELSFTFQCSDVAGAYALAMQYVPQVGGVPSTLPTTLAEFEGPAVGYCETGRGREYTYTVPSHVLNAMGLNYYSTRVNTSPSQDPDVLTQGLMVFLTSTPATPIIAYMHVKYEFQTLEDPSFLARLVNGDENEVKDSVVVKPPTTGGELWN*
Ga0079255_1236663	Ga0079255_12366631	F082867	MPKKRSSRRVHHINDINHNDTNITVQYRVVKPLTFTSNTLALAVNPSLTDLSNTLATIYRQYRITELSFTFQCSDVAGAYALAMQYVPQIGGNPSALPTALNEFEGPAVGYCETGRGREYTYRVPSHVLNAMGLNYYSTRTNVSPPQDPDVITQGLMVFLTSTPATPIIAYMHVKYEFQTLEDPSFLAKLVNGDEKETSATDSVIVSPPSGYLDTNSVKEGKLWN*
Ga0079255_1242602	Ga0079255_12426021	F082867	VHHINDINHNDTNITVQYRVVKPLTFTTNSLLLAVNPTLTELSTTLATIYRQYRVTELSFTFQCSDVAGAYALAMQYVPQVGGVPSTLPTTLSEFEGPAVGYCETGRGREYTYRVPSHVLNAMGLNYYSTRVNTTPSQDPDVLTQGLMVFLTSTPATPIIAYMHVKYEFQTLEDPSFLAKLVNRDDIEVKDSVVVRRPTQAGGQWNQAL*
Ga0079255_1250510	Ga0079255_12505101	F082867	HINDINHNDTNITVQYRVLKPLTFTSNTLALAVNPTLTDLSNTLATIYRQYRITELSFTFQCSEVAGAYALAMQYVPQIGGNASALPTTLAEFEGPAVGYCETGRGREYTYRVPGHVLNAMGLNYYSTRTNVSPPQDPDIITQGLMVFLTSTPATPIIAYMHVKYEFQTLEDPSFLAKLVNGDEKRDKEAVVVPRRVELKYEKSPGEKLW*
Ga0079255_1255328	Ga0079255_12553281	F053827	RYGAKDVNEWPSKKVYDEKTPRPTQYYGKGNWMKPTPKPTEYAKNVYTKAPKTPEPTKDSYKGRTYSADEIYTQLEEILLAEDPVAAIEEQLIIHGEEEGDDRLFSYKIPDGGRCTTPIFGFVNTRCSGGCCENGRCFSKKKDWANVSYCPAECRGWPFAPQGTC*
Ga0079255_1256405	Ga0079255_12564051	F003495	MKENNEKKIKNEDEISKLTKAPPKDTAALDKRSVLAKVNSQGSGQ*
Ga0079255_1259817	Ga0079255_12598171	F013645	MKIEVNKIMKPAFLLGTAFNIAYWHRKYHSGTICKGVSNALTSKALSGCEREDTPK*

Showing 1 to 22 of 22 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007213: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 NT10 metaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences