3300007196: Human saliva microbial communities from NIH, USA - visit 1, subject 763961826

Overview

Basic Information

• IMG/M Taxon OID: 3300007196
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052642 | Ga0103270
• Sample Name: Human saliva microbial communities from NIH, USA - visit 1, subject 763961826
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 110290466
• Sequencing Scaffolds: 22
• Novel Protein Genes: 25
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
Not Available	4
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus parasanguinis	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F036281	Metagenome	170	N
F046433	Metagenome	151	N
F051211	Metagenome	144	N
F054109	Metagenome	140	N
F054110	Metagenome	140	N
F066860	Metagenome	126	N
F067847	Metagenome	125	N
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F077405	Metagenome	117	N
F078842	Metagenome	116	N
F085820	Metagenome	111	N
F092230	Metagenome	107	N
F097527	Metagenome	104	N
F099454	Metagenome	103	N
F103433	Metagenome	101	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103270_100008	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	224115
Ga0103270_100189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	41434
Ga0103270_100494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	24260
Ga0103270_100909	Not Available	15573
Ga0103270_100968	All Organisms → cellular organisms → Bacteria	14862
Ga0103270_101245	All Organisms → cellular organisms → Bacteria	12331
Ga0103270_102118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	7964
Ga0103270_103510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	4999
Ga0103270_103974	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	4427
Ga0103270_105687	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3108
Ga0103270_106650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2621
Ga0103270_108308	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	2065
Ga0103270_108998	Not Available	1894
Ga0103270_109097	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1871
Ga0103270_109278	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1828
Ga0103270_109835	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1715
Ga0103270_111820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus parasanguinis	1413
Ga0103270_112259	Not Available	1361
Ga0103270_112602	All Organisms → cellular organisms → Bacteria	1322
Ga0103270_112659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1316
Ga0103270_116125	All Organisms → Viruses → Predicted Viral	1010
Ga0103270_129696	Not Available	558

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103270_100008	Ga0103270_100008103	F105378	MNINVYVDNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDAEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASALDNIKVVNGFFSGNSQATVIRNTKQNQNGEFVRPIFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFTGSFQCMIVYPLGSANR*
Ga0103270_100189	Ga0103270_10018935	F054110	VNYQPTIKKLLKALQMNGRRYVVDTRQSWSKFDKPCKVYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD*
Ga0103270_100494	Ga0103270_1004945	F054109	MTGRPKSKKGVKVHTAFKIYPKDKERAQIMADKLDMSLSAYINKAVLEKLANDEKSEA*
Ga0103270_100909	Ga0103270_1009094	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSIHQFVTDEEKNKWNNKLNAPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADAISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0103270_100968	Ga0103270_10096810	F103433	MIFVMKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWSGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARAIAGLSPDDASKIPAYIKRASIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLSFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINKIVNLDNMANNGGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYILIGLWADYVVKRTVKYE*
Ga0103270_101245	Ga0103270_10124510	F036281	MITLIKVDEGPVDIHELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYSYKEYFDYWTAREGRPAPFFYESRQYHVKSFMRVPGMPELLITAEREKDHWYTFRLSDGLKSKFTRHTITNEKGHQSYDWVLKNAQWELDTIRYF*
Ga0103270_101245	Ga0103270_1012452	F018385	MAEYVNQWESYKELSIENDRDPVLDNPIIYGVNVKHFTLTVYSPEGRVNKYWNARILKDQVGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRMNSRLPSTLWNTKEVN*
Ga0103270_101245	Ga0103270_1012459	F027205	VASRLIVSADDILKAVKESEEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0103270_102118	Ga0103270_1021189	F092230	MRQAHKRMVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQSTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV*
Ga0103270_103510	Ga0103270_1035101	F077405	NSRPRPWQGRALPTELFPHLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK*
Ga0103270_103974	Ga0103270_1039741	F068942	MIRKILSLPTLALCFTLGSAFFAGCNEDYIKNTETKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSRISFSGSVSTLDTFTRHDFSESDKDTAYYKDIVIYLTRNKSKGTATLKLVAPPNRTQQPKQFDFSIEVTPPAMYIF
Ga0103270_103974	Ga0103270_1039743	F068942	MIRKILSLPTLALCFTLCTALFAGCGENNDGFVTEVHWSNVKNPEYGNAINITLKAEGETFTTVGNHSWISFSGSVSTLDTFTRHRFSEVDKDTAYYKDIIIYMTRNERERTTTLKLVAPPNRTQQPKQFDFSIEVTPPAMYIFKVRQPALPAKAQ*
Ga0103270_105687	Ga0103270_1056874	F099454	MALTFVLTSCDRLTDEPTLEDRGYKYFDSTAQQKSFRVVTASGKPYNHKIDWHIIGILDPKSENYLTKKIDTLSNGDLKISYDWVAFIVRENKSVIDVEVQKNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK*
Ga0103270_106650	Ga0103270_1066502	F105378	MNIKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKSKWNNKLNAPIPIQDHLENNQIGYDSANSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNETGQLIIPVFVDVQCVEYTAGDLGEVSVSYTADAISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0103270_108308	Ga0103270_1083083	F072446	MSSKLHKRRSFTPRHIHYQNRSGLGMTTGPKHSTTNLTIFLRIYKLGDTLLENIPPMKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDRTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLRGEMKLRIRDYSYRLKYPSGIITLDCENTESLTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYQQYGFIPESTYFTTLWPLPDYKYNEREL*
Ga0103270_108998	Ga0103270_1089982	F032313	MSNCNWRAQSVSIGSFKIVLMYRFLILLFALTLMACDNDTPQEKPREQEKHEVPVPVPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLISVFGMLTSKIPKQRFDSLFKQTVWEVKDIRVVETDLSLAKKNPGILGWVTTTEFTCRNGVILLHWQGIDVNHVDTVNYVYDEVDNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0103270_109097	Ga0103270_1090972	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDRE*
Ga0103270_109278	Ga0103270_1092782	F033081	MHTDMHTDITVVYRPKKGVIAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFCVVAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATVTAWTVGMAGGVFLMGDFTNYTPSQKFLHKIKATRCEVYNTILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSATGFGFLLVYLWYSRKYRNQIIATAAAATVHALYNAIALSLITVVVAVYLAIDIAKLL*
Ga0103270_109835	Ga0103270_1098351	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIAEVDRSELSKKLREVQISPWRKQIDMAYRKAHNESSVNTLFCTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMSDSARIRQMINSIELDVYEINS*
Ga0103270_111820	Ga0103270_1118201	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPARPCGHWILS
Ga0103270_112259	Ga0103270_1122592	F085820	MYEKTTFLLLLSENDYLCVVLIRNCSNFICALMRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVANECHFHRTWLTQGVKAIRVVRTHADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPAGLKQRIVLRLADGTEIEKELSDKRKK*
Ga0103270_112602	Ga0103270_1126022	F051211	MRVKKAIKVFEKIRDLPYGTSGSNEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEYILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRYLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS*
Ga0103270_112659	Ga0103270_1126591	F046433	MIELPTSPDALSELSPVAPPKLLSQAQDASRGNLMVYVKADNYLGTETSDPSFMKIRCKTTEYEAINDFVQFIEMIKHYLPDYMEDCAKELIDELAFLGMPELNFAANALAKRLRCHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFSGDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVRERIAGFEVDNDPEDHEASVLVMAASGDYLDNGISAYSQYGGTIYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGEDFDGLSRFRQLLERE*
Ga0103270_116125	Ga0103270_1161252	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYAMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELKNL*
Ga0103270_129696	Ga0103270_1296961	F054110	LPSHCVRCIDYNRYCVVLDVNYQPMIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLIFPHKYKKGKTFKQGQLYKKESEYSSTKQHE