3300007186: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 246515023

Overview

Basic Information

• IMG/M Taxon OID: 3300007186
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052640 | Ga0103259
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 246515023
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 131731885
• Sequencing Scaffolds: 21
• Novel Protein Genes: 22
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp. OH1205_COT-284	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus haemolyticus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F046432	Metagenome	151	Y
F046433	Metagenome	151	N
F051210	Metagenome / Metatranscriptome	144	Y
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F073671	Metagenome	120	N
F078842	Metagenome	116	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F081456	Metagenome	114	N
F085820	Metagenome	111	N
F094007	Metagenome	106	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F095633	Metagenome	105	N
F099453	Metagenome	103	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F105378	Metagenome	100	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103259_100001	Not Available	326144
Ga0103259_101111	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	17279
Ga0103259_101226	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	16088
Ga0103259_101408	All Organisms → cellular organisms → Bacteria	14761
Ga0103259_101608	Not Available	13326
Ga0103259_102103	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	10821
Ga0103259_102308	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9975
Ga0103259_105566	All Organisms → Viruses → Predicted Viral	4402
Ga0103259_106037	All Organisms → cellular organisms → Bacteria	4015
Ga0103259_106518	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3693
Ga0103259_106672	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	3604
Ga0103259_107577	All Organisms → Viruses → Predicted Viral	3113
Ga0103259_108848	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp. OH1205_COT-284	2643
Ga0103259_109135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus haemolyticus	2551
Ga0103259_109961	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	2314
Ga0103259_111111	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	2059
Ga0103259_118297	Not Available	1169
Ga0103259_121489	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	972
Ga0103259_121919	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	951
Ga0103259_123021	Not Available	902
Ga0103259_137552	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103259_100001	Ga0103259_100001316	F051210	MNNYSQIMGNSAMMDALRASSVSAEDARLRGNEYAKMFSRNEEMMNVFGLGGNNANLLQKTFSGYSETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRQVLPNLGPDQYQDVQVMGAFELPVTINTGTAAYSPLVGRKLIPGTVRVKVEDGTGKKFELIDNGQGSFMAVAGVLKTGTVNYLNGKIDFELTTAISNPAGKITIVGKEDTTGTPSCTNGASNAHANDKRFIAKMQQVALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINYRLISTLEKGYTGDVMNDLDLSNASTSLASKFQDYRSRVDLFDAYLINVETSLATRAVKGVTTTAYVAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIHEEQGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF*
Ga0103259_101111	Ga0103259_10111115	F081455	METIAKTKNIGFINNLINTCDGYIKINHKEKLRERFPRNTIIEEKDIPPVEEIGAEKVDIIDVAEEAIQQPLQNKDSSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAIRLLNYKMSDQNAAAAFAQFVSEFNPECDPNKRLRYELIRHQGREKYLVIRLSTVVNGTTKYYADIYPDLNKIDLDHHLISSAKK*
Ga0103259_101111	Ga0103259_10111116	F080166	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNTIHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTIIEESINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGTNRQNMLR*
Ga0103259_101226	Ga0103259_10122610	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTYHKTIITTNPLESKMLQFEFDNQLAGFDVDIKEYDQPTRKLKPVYNGLNTDGINNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGSNGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARKNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWTEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMNMKIFVFAKDVFGYNAGLHKADQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITFITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0103259_101408	Ga0103259_10140813	F103433	MIFVMKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWSGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAVDSKEMMSQDCNPSQVEPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLSFSPWTAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESIAIFLKLLNGYEYVSTIAISVLVPIVFFELVHKNVKIINLWKQAVPVFTATVVAFFGAYWVNFVSLTDYYGSSDKAASAINAKASYRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGYALPHAHINGIIFYIPLLLFVYVLIGLWADCVVKRPVKYE*
Ga0103259_101608	Ga0103259_1016085	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSIHQFVTDEEKNKWNNKLNVPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0103259_102103	Ga0103259_10210311	F095633	MRNYENSTEVGCREGLTEGELRTMGTLAMEATEELKKTTISKEAVLLGGVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDRGEMSVEENSVPEEVFIDLSRTRCVVDMDRSHKSYKFTCPVLKKYPSGELYPIREAYVISAIDVNGSQEVDFKVI*
Ga0103259_102308	Ga0103259_1023084	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSYMVDLSLHINNLLVNISDLKNLGKITQLEPSIENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY*
Ga0103259_105566	Ga0103259_1055663	F099453	MNRFDVIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLTDIIYTPKYPMAIAMAKLEYMLGKKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA*
Ga0103259_106037	Ga0103259_1060375	F033081	MLPPYFMVVHRPQKGAMAWLLRRAMPRDTRPIFVWPKLVVAIEGYFHRRWLVAIAVLLIAVTIVIAKALLLVPGLDNSVVGLLTSIFETFLPARWATGAAWVAGMTGVFLIGDFTDYTPSQKSLHSLRATKWGVYNALLLFALWEEQAFRSGSEKWSWRERVRASVCFGAIHVVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRNQIVATAAAATVHTLYNVIALSLIVVAAAIILVIDIAKMM*
Ga0103259_106518	Ga0103259_1065182	F032313	MYRFLILLYALTLMACDNDTPQEKPREQEKHEVPVPKSKPQFDEVGERIWYEQTPTMRLDSTDYGAGLTPVFGMRTSSISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGILGWVTTTEFTCRNGVILLHKQGIRVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGHTMWGPFDWYYGRNSGRSEVMLEAK*
Ga0103259_106672	Ga0103259_1066725	F046433	MIELPTSPDALSELSPVALPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMKSRCEMTEYEAINDFVQFIEMTKHYLPDYMEYCAKELIDELVFLGMSELHFAATALAKRLRHHLEVDNNPVYIDVVNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKVLFLDDWIISGDQVKKRIAGFGVDNDPESHEASVLVMAASSNYIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGCEVDDIAYRAIDGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG*
Ga0103259_107577	Ga0103259_1075773	F095629	MTFKERMMRELIICLCLLGCFSVANANNVEQPKEVKIVHNDDSVALHKKIYQLEKRIERLEELLKKEDK*
Ga0103259_108848	Ga0103259_1088485	F068942	MIRKILSLPTLALCFTLGSAFFAGCNENYIENTETKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSRISFSGSVSTLDTFTRHDIPKVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFDFSIEVTPPSLYIFKVRQPALPAKAQ*
Ga0103259_109135	Ga0103259_1091355	F073671	MESLLRLRMTNNKQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKEQK*
Ga0103259_109961	Ga0103259_1099612	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDRTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGVAERGNTYDLRGEMKLRIRDYSYRLKYPSGIITLDCENTESLTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPSKSVQQYYTPNGYEREATYFTALWPVHDKYNEKEW*
Ga0103259_111111	Ga0103259_1111113	F046432	MQMSESRLSDVISKYQMPEGRYSVEGEGSFGESEFFWVIKNQSTNQKYLLVNTYSHHGVEAELECYREGGFENLEAIPRRIETLEIASYADDEISKYLFGMFSLFEIKS*
Ga0103259_118297	Ga0103259_1182972	F085820	MYEKTTFLLLLSENDYLCMVLIRNCSNFIRALMRSTFYLFAMLFLATTFFSCETGEPAPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTRADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLADGTEIEKELSDKGK
Ga0103259_121489	Ga0103259_1214892	F094007	MKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAMNACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRPGWNKGCIDNNA*
Ga0103259_121919	Ga0103259_1219192	F078842	YGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQRAFVRCSDNHKQVILNRSTLNAVLGGCIIGGKGWLEMADSAQIRRMINSIELDIYEVNS*
Ga0103259_123021	Ga0103259_1230212	F103432	IHSLFSLSLLLVLGGLLCIPACQDDAEPTQRTGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHSLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVAGIDRKGKPRDLGNYSCPLLQGKRRNVNFRTKEGVFHEYFEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLR*
Ga0103259_137552	Ga0103259_1375522	F081456	SLIFLIVFGAISFATWLVWLTNAAFFVKLVITAIGILFAAFTVILYTISAE*