3300007167: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764042746

Overview

Basic Information

• IMG/M Taxon OID: 3300007167
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052614 | Ga0102715
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764042746
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100773841
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Predicted Viral	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F028722	Metagenome / Metatranscriptome	190	Y
F036281	Metagenome	170	N
F047508	Metagenome	149	N
F054109	Metagenome	140	N
F074985	Metagenome	119	N
F090517	Metagenome	108	N
F099454	Metagenome	103	N
F103435	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102715_1000074	All Organisms → cellular organisms → Bacteria	36906
Ga0102715_1000167	All Organisms → cellular organisms → Bacteria	26338
Ga0102715_1001647	All Organisms → cellular organisms → Bacteria	6751
Ga0102715_1002950	All Organisms → Viruses → Predicted Viral	4461
Ga0102715_1010954	Not Available	1652
Ga0102715_1021789	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii	938
Ga0102715_1021977	All Organisms → cellular organisms → Bacteria → Terrabacteria group	931
Ga0102715_1035149	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	619

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102715_1000074	Ga0102715_100007442	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNIKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0102715_1000167	Ga0102715_10001676	F054109	MTGRPKSKKGVKVHTAFKIYPADKARAQAMADKLDLTLSSYVNKAVLEKVARDEKSED*
Ga0102715_1001647	Ga0102715_10016474	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0102715_1001647	Ga0102715_10016475	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTYESGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKVIHMGSTKRINLEQFDQIWLDQTFQKLHPIIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0102715_1002950	Ga0102715_10029502	F028722	MATTVDNGQTCLEKRGIEERHKEITRSDYNIEDQYGPTHKDALSDGDPQGKGTGHGGHTHYLPDCTKPTGMIDYSNFDTEHGGGQYDIEGRNNISGRKRALAISMYNKENMYGPTLVDTSVNRSDGQYFVGQTTKHL*
Ga0102715_1010954	Ga0102715_10109541	F047508	GWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0102715_1011756	Ga0102715_10117562	F103435	MKFVFCTEPIYQYYRSXXXXKLDKQLMVEYGDYKDFWDLKQQQDALPENIFVAELTARDYPRNPWNYVSQLISKLTYQYLIDSQDFETIFSEVLFNQSEVEFYEFYKAIYRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYSIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQVWYPFDMNTYTNALE*
Ga0102715_1021789	Ga0102715_10217891	F099454	LRYSQRHLVETERIYLYLVSKRTYKPKTHSGIKTLMKASKLLWAVVMSLTFVFTSCDPFSQNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKPYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFIISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK*
Ga0102715_1021977	Ga0102715_10219772	F054109	TGRPKSKKGVKVHTAFKIYPKDKERAQIMADKLDMSLSAYINKAVLEKLAHDEKSEASTETN*
Ga0102715_1035149	Ga0102715_10351492	F090517	MNRRIFSFSGLLLGLLFLASSCKKDTPRLRLSSVELRQTVWNGTLEYKSAKYGPYFVYLSFVSDSIVEVSTFATTDLTVAYDSKDLCSYTMDDRILTLRARDEPYLNVSIDRNSWYLIRKEPSLLVFQANAGNPAAEVTLTLRKKL*