3300007128: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159207311

Overview

Basic Information

• IMG/M Taxon OID: 3300007128
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052635 | Ga0102725
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159207311
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 63241809
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
Not Available	1
All Organisms → Viruses → Predicted Viral	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F099454	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102725_100081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	48341
Ga0102725_101579	Not Available	6686
Ga0102725_102236	All Organisms → Viruses → Predicted Viral	5000
Ga0102725_102655	All Organisms → Viruses → Predicted Viral	4269
Ga0102725_103030	All Organisms → Viruses → Predicted Viral	3796
Ga0102725_105817	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1892
Ga0102725_109179	All Organisms → Viruses → Predicted Viral	1117
Ga0102725_112600	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	791

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102725_100081	Ga0102725_10008160	F067846	MESLQAQWERKTFNDHDRRCCAEDAYNRAIEREIECIEEDIMNGDSEELCIFYEKISEDDEFLKAIALGNDFEEMRIKILTAMAEDRLEQLEKDYRNGYILND*
Ga0102725_100081	Ga0102725_10008166	F073671	MNKEQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKGRK*
Ga0102725_101579	Ga0102725_1015793	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGEKLNRELILSSMNIFNLYKDIINLDDVLLLTELRHTEWYRDWFTSDKRNSDLIDLSRFNFRVLERFEKEEYLRDVEHYDFEGVIEVDSYGLCNTLREDEDIELFKLAAENILLNHGFFNNTDYNLYEVPDEYMSDQEVCLYMCLLNKDNLDFMDKKTFDSTLLYNIVKDRICGSIYFTIFDSLNEDTRTRAR*
Ga0102725_102236	Ga0102725_1022367	F092229	MNKEYRFKHIPEVVLRNVKFIRENNIDIGTGDDVLECMMDINPVLRQRIYNDYDLAKDVAERRFHTNIEELDLTTILQKCTTRPYIAILNNIYFRYFNSKLIDDMFKLGESTKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLLVAARSENFNPEMVRDIFLKYGLKTNSSRNLYNRMDNNLSLFYYLEDYLEEYVNTGKFTYGSQEYSTIKEFKYLPLMNVLTQLTSSNPSGYVLNHKLELVKG*
Ga0102725_102655	Ga0102725_1026555	F089057	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDTNDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLSSLSIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIVNKDIDKLASLCTGYLAITKDEVLVKKLMNESAMTAFKYMSDEDIHTVVDDINSRSVLARYLSRM*
Ga0102725_103030	Ga0102725_1030301	F095631	AMFVFYEDELVLNTISDTFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVSNFCNYTYIDSSTIRVMFDNTSYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNVIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIIDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLTDRDTYFGDISIMQNIQSDIGLVHKDDPHDPEKITGVDIKVLAVFYTDEKYQVPYRWAEAEFVNYDQGTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNTTRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDHIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIVDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0102725_105817	Ga0102725_1058172	F080166	VNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCNIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDIPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMR*
Ga0102725_105817	Ga0102725_1058173	F081455	METTNTENKNLFQQLARLGFDVNKSLLELEKDYSPVEEIGMQNVEIIDSAEEAIQQPLANTDSGIAVNFSQMINKPEVEEVKTEVASVPDNGETKVNVFFPKNEHILSNYVDYDSFNKIKESNTETIVRAVRLLNYKMSDQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDIDHHLISSARK*
Ga0102725_109179	Ga0102725_1091793	F095629	MRELIICACLLGCFGVANAAAPVEQPKEVKVVHNDDSVALHKKIYKLEQRIERLEKLLAEKEGK*
Ga0102725_112600	Ga0102725_1126001	F099454	MRAGVFLQCSQRHLVETERIYLYLVSKRTHKPKTHSGIKTLMKASKLLWAVIVALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSM