3300007127: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763435843

Overview

Basic Information

• IMG/M Taxon OID: 3300007127
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052645 | Ga0103277
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763435843
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 47732744
• Sequencing Scaffolds: 8
• Novel Protein Genes: 14
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F051214	Metagenome	144	N
F054109	Metagenome	140	N
F055792	Metagenome	138	N
F067847	Metagenome	125	N
F074985	Metagenome	119	N
F090517	Metagenome	108	N
F099454	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103277_100037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	43815
Ga0103277_100064	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	30969
Ga0103277_100103	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	19153
Ga0103277_101059	Not Available	4009
Ga0103277_104856	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1483
Ga0103277_110628	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	861
Ga0103277_112206	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	778
Ga0103277_114556	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	684

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103277_100037	Ga0103277_10003710	F027205	VASRLIVSADDILKAVKESEEFEKKTLYEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK*
Ga0103277_100037	Ga0103277_10003714	F051214	MPGKIVAHDTHLRIDTEFIELKDCFDAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0103277_100037	Ga0103277_10003716	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYHEAVK*
Ga0103277_100037	Ga0103277_10003723	F067847	MFSHIIRIKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYSGILPEKIMKQVAEDPKYKELDSKLKETELKNL*
Ga0103277_100037	Ga0103277_1000378	F074985	MTELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFNINTCPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDEIFISDTFRKLRPVIVLHQEKFWHVMGLELNSYDGESCWYIYLKRQDSDFMTRIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKKTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYTLDHIKAMHID*
Ga0103277_100037	Ga0103277_1000379	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFLYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHAMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0103277_100064	Ga0103277_10006423	F055792	MEIASQALDSTSAVAHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGAEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL*
Ga0103277_100103	Ga0103277_10010314	F090517	MNRRILSFCGLLLGLLFLASSCKKDTPRLRLSSVELRQTVWNGTLEYKNAKRDSYSVYLNFLSDSEVEVSAYASKDPTASYYEQARYYYTVTDRIFTLKAQVNRELRPPMDQNIWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL*
Ga0103277_101059	Ga0103277_1010592	F054109	MPGRPKTKRGMKVHTAFKIYPDDKARAQAMAEKLEVSLSAYINKAVLERLERDEKSED*
Ga0103277_104856	Ga0103277_1048563	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKASWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0103277_104856	Ga0103277_1048564	F051214	MPGKIVAHETHLRIDTEFIELKDCFEVFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIV*
Ga0103277_110628	Ga0103277_1106281	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYGSGNAMYVEFKASEGEVRILEYRQLYDVDTENAVLFTIDKCPQESILLKNIEEYEFIQYRPQQAWKVIHMGSTKRFSVSDFDELYIDQTFRKMTPVAFTHNNQFWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYLL
Ga0103277_112206	Ga0103277_1122061	F099454	MKASKLLWAVVVALTFVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLDSPSMTIIQRAK*
Ga0103277_114556	Ga0103277_1145561	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEK