3300007105: Human stool microbial communities from NIH, USA - visit 2, subject 764447348

Overview

Basic Information

• IMG/M Taxon OID: 3300007105
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052586 | Ga0102630
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764447348
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 127938743
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F052660	Metagenome	142	N
F062845	Metagenome	130	N
F073656	Metagenome	120	N
F074899	Metagenome / Metatranscriptome	119	N
F074964	Metagenome	119	N
F081354	Metagenome	114	Y
F089053	Metagenome	109	Y
F090484	Metagenome	108	N
F090514	Metagenome	108	N
F099406	Metagenome	103	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102630_100035	Not Available	143827
Ga0102630_100571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	33233
Ga0102630_100812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	25140
Ga0102630_101246	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	17144
Ga0102630_105198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3891
Ga0102630_108395	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2244
Ga0102630_108473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2222
Ga0102630_108834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	2122
Ga0102630_115210	Not Available	1135
Ga0102630_119303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	870

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102630_100035	Ga0102630_100035110	F074964	MITKKNINRLQNVVIKENASNLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFALYSKVYKDTNADKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLVKETDEYKSTYVAVKIKSYSIRTIAKCVSEYLAHESNQQ*
Ga0102630_100035	Ga0102630_100035137	F090484	LFFVDSCSSSSVTGFWRLSAKRHKSDGYPQKSIRFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEFVEGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSAWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTDTDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISIQSLPNISITVDNDKELDGESIFKDIPFEELSFYNDTYLYPSSQYSSL*
Ga0102630_100035	Ga0102630_100035156	F099406	MAEVGYNSKFEGREVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPAVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLKSLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLADNYYSLDYFLEGRDFEGAFELKIVFVSFSDTNTGEGVSESDIEIHVGTYTVTQDKAYKVLSNMVTLSNTMMSYLRFMSKAPRAVTTLVNLPKDTHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA*
Ga0102630_100571	Ga0102630_10057121	F052660	MCILHILPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYRQFLHGGILMGIALPIPSHRAKSHDFACWWPATAGHSRSADALPGKSNS*
Ga0102630_100812	Ga0102630_10081217	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIF*
Ga0102630_101246	Ga0102630_10124616	F073656	MEQDQEQMQGALYVAVDDGNKIIAMERSRRSDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
Ga0102630_105198	Ga0102630_1051984	F089053	MEGPRPDKFAFGVRIGRVVDECRPAKGCIRKWIHGFAYGQPELSTAEEVNVKNMEVSL*
Ga0102630_108395	Ga0102630_1083951	F101355	MISPTT*GALSLRAIRPKNLAAINMIARSRKNRYIMIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*QSQMCLL*
Ga0102630_108473	Ga0102630_1084733	F062845	MKKTPFILHEKFRSDNNEQRKEQFQKRFEQYIVDALSNTVPSKSCA*
Ga0102630_108834	Ga0102630_1088343	F074899	HRDPHGEMSGWKQWSKQAVTSSFLDKKPPKSLVQQGLEGSTPVGKDEVGSSNLPSSSNKTL*
Ga0102630_115210	Ga0102630_1152102	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKLYFRSRLRGKG*
Ga0102630_119303	Ga0102630_1193031	F081354	KKALDLVRENQQSSAHNFVKDFSSIYPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNPLR*