3300007070: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC2 2012 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300007070
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0115599 | Ga0073929
• Sample Name: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC2 2012 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 206314244
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.9543
  • Long. (^o): -116.5155
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001489	Metagenome / Metatranscriptome	686	Y
F018387	Metagenome / Metatranscriptome	235	Y
F024517	Metagenome / Metatranscriptome	205	Y
F028182	Metagenome / Metatranscriptome	192	N
F029547	Metagenome / Metatranscriptome	188	Y
F069779	Metagenome / Metatranscriptome	123	Y
F070985	Metagenome	122	Y
F081382	Metagenome / Metatranscriptome	114	N
F099502	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0073929_1002403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12114
Ga0073929_1003006	All Organisms → cellular organisms → Bacteria	9361
Ga0073929_1003405	All Organisms → cellular organisms → Bacteria	8141
Ga0073929_1006120	All Organisms → cellular organisms → Bacteria	4251
Ga0073929_1013794	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1868
Ga0073929_1014262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1812
Ga0073929_1014871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1748
Ga0073929_1016710	All Organisms → cellular organisms → Bacteria	1573
Ga0073929_1023340	All Organisms → cellular organisms → Bacteria	1169

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0073929_1002403	Ga0073929_10024038	F018387	VLGAEPPLLEQGSVQFILFGLMVLAIFVGLWITISK*
Ga0073929_1003006	Ga0073929_10030062	F099502	MTEKANQESALGTIIGWGSLGIFALWFAYQVAAPLLIGEQWAEKQNDAIELVKNSKPLGNETLYDMIRAYSLKAKENDFFVGEFSWSAIQKDGPEYEVTLLWTEGDQKKVALWRVNLENKEVRPQGDAASLPQRLAAGPPKKGTGS*
Ga0073929_1003405	Ga0073929_10034057	F028182	MRYDTHVMPKVSISEAARRFDTTKEVICAWIRLELLDMEPPPAKPRRTRELNLAFQPTSAAPEPKVDLKQLYEVAEEVGWLLLSLEAWDRADTETACRLSHTGTIPPP*
Ga0073929_1006120	Ga0073929_10061202	F081382	MSKHGEVLEIAILPAGGRAKQVVQRALGKRRAHIRVHNLCDIADASAPMLALIDGSALQGGESVLAEVITLLQQSAWRDAPIVILDDSGADLRRGFAAGYAARIRLDSSPEAIAQLIDRMMHTAV*
Ga0073929_1013794	Ga0073929_10137941	F024517	MYGLHTIQDVHRLVKAFAGVPDCFVPLKTRREISYPLSFRVPLSQVEEIDAAAAREKRKRRSDLLEAIWEVAWAEYKRAGSLEAYASGRRGRGYTRRVSEELQDQIFTAVELILERAPSA
Ga0073929_1014262	Ga0073929_10142622	F069779	MCRALKVLCVAEDAEGLAALKRAAVSAEWELAPGATEEAEALAQLHAERPHVVVVFGPFEGFVRAAREAYPFLRIVADRDLPGATVVATSLEEVRGAVKGLPRPGGPVR*
Ga0073929_1014871	Ga0073929_10148711	F029547	QYRITMDYLARRREELAGVVTHRLPLERIGEGFEAIRSGAALKVVIEP*
Ga0073929_1016710	Ga0073929_10167101	F070985	MTDIRGVGKRITYSEDNPITEWVHNLRKQRDGLKREPRDQAERELLARWLGYRGRDELETIVGSAAYALSHFEMDSEWRYILAEHMQTEAGHGWGYIQQANRIDPSRDHSQPDPAFVEQY
Ga0073929_1023340	Ga0073929_10233401	F001489	RDFLSYLFAGNLWPYGPCTAATIQSIMITTPEVLEFERRVVEAEEQEHHTAALQKLHDYVWELIERYGEDYVRKRIAEIDAAALNSGSRIIFDPPRRDFLRKYFNVPLENATRFFEFREYLYLNVLGFPPEPVHIKTWPAEVPQPSPAAV*