3300007069: Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu 'bubble', cg4ads

Overview

Basic Information

• IMG/M Taxon OID: 3300007069
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124810 | Ga0101646
• Sample Name: Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu 'bubble', cg4ads
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 75624207
• Sequencing Scaffolds: 47
• Novel Protein Genes: 51
• Associated Families: 38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	8
Not Available	28
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Oenococcus → Oenococcus oeni	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → unclassified Prochlorococcus → Prochlorococcus sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp.	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1
All Organisms → Viruses → unclassified viruses → Virus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Dobu 'bubble' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.73665
  • Long. (^o): 150.867667
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003751	Metagenome / Metatranscriptome	470	Y
F004325	Metagenome / Metatranscriptome	443	Y
F006793	Metagenome	364	Y
F007475	Metagenome	350	Y
F007683	Metagenome / Metatranscriptome	346	Y
F012584	Metagenome	279	Y
F015565	Metagenome / Metatranscriptome	253	Y
F016534	Metagenome	246	Y
F020857	Metagenome / Metatranscriptome	221	Y
F022150	Metagenome / Metatranscriptome	215	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101646_1003296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	1806
Ga0101646_1003793	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica	1648
Ga0101646_1004731	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1433
Ga0101646_1005470	Not Available	1318
Ga0101646_1006377	Not Available	1215
Ga0101646_1007327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Oenococcus → Oenococcus oeni	1130
Ga0101646_1007562	All Organisms → Viruses → Predicted Viral	1113
Ga0101646_1007585	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1112
Ga0101646_1007691	Not Available	1104
Ga0101646_1008515	Not Available	1051

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101646_1003296	Ga0101646_10032966	F101313	MGSALKREFKVGDEVCHTNKFSTGNNFRKRRQGVVLALEKRPVKGGKLRSYVKVLWNTSSVPCYHASHALLLLKERKDAIEEASKLIST*
Ga0101646_1003793	Ga0101646_10037932	F007683	MSFPAMSSGLRFCGTGGGRWVHPRGANNMAASGLVFRSDLVGIGRAISILFGINGVRNK*
Ga0101646_1004731	Ga0101646_10047312	F047732	MQRGYAICTTDLSRILTIAPCKTKFIFVPITSGQVLTDAICFTDISNAKTIESRARKKFEGMPETRIVNVALLYNRIDKQNELSNL*
Ga0101646_1005470	Ga0101646_10054701	F064809	LVHDMTLPKTVLCTFTMEISMLTTTFTGNITFAEIVTHDGQGNPLDNPFLAAKIAVNDVNDNGLTIEIRTKNGLLKAAQNGENLVGTRVTVAGSIELASISSHWVDENGDLVARKKPQFRVYVNMIERHGRKQPTPAAATVQAELAV*
Ga0101646_1006377	Ga0101646_10063773	F006793	MTNNRSNNQQMEERVNYAADQLAKGKRAMDISKKLASKYSVSIQQARDYVRQAKPVLTQSISPNDRAFIFSKVMSCLEQDRLDARDQENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSAKESEGDYLFRNFSEVARKKKKYGDLDSLDNSDMPFYKGGIGCIKI*
Ga0101646_1007327	Ga0101646_10073275	F032991	VINLELDRRDAIVLRHHLFLYTKDHPGFFSDEGILKIREISQLIDKHLEEEV*
Ga0101646_1007562	Ga0101646_10075621	F078835	MNKKDQLTPEEYKRVIHVLTPFTLGRRVDDQYHFRTIRAKLKRQLASLENNGWYSK*
Ga0101646_1007585	Ga0101646_10075853	F092220	MIMEPVKAIEPITEKDEIQKFQELKEQVFKEYADYSLNKLYNFNELLITTIHQLQFKQMAMQELITHRLDNICPKETTN*
Ga0101646_1007691	Ga0101646_10076911	F015565	MLLFCAKTVVKESREFEPARLKKKEKHFGRLATFWFGTFAMLFSATGCVHSKMNGRVL*
Ga0101646_1008515	Ga0101646_10085152	F035204	MPPCEPVFQVIELGCDSENLEKLSMETTVLNVHYVMRILGFHVTFNVT*
Ga0101646_1008771	Ga0101646_10087711	F015565	CAKTIVKESRKFELARLKKKKEKHFGRLVTFWFGTFAMLFSSTGCVFRHEHTRR*
Ga0101646_1008828	Ga0101646_10088284	F073669	MIEPNMKLLEAMRDEANLCYERGDEADGNALVESIFAQIFPGLVEAAKNDPKIIYQLIIQANSSDVRLADHSKSILLYLKNEGVKF*
Ga0101646_1008864	Ga0101646_10088642	F003751	LSSFNHEGVFGWPGIEAFEQIGYVKVTNLAADKASNKSFNITVPSPDRRVSDRVRDDRTSLVVKASTDRPAYVYGASIAIAQDTPSGGLPSFPASPITADLGGTTTELLLLGPDNSGNPIGVPATQALGNAAASSTLTCASSLFTQGSENVTLAKIPFWTSVTTAGIDDQDAANSMLYKVTADTTFKVYNVNAVTGTAVNGDGVFISQDDSDAGRAAYIVCRVNYLRPAKAVTWDDVSSFVDFASQVGGTDS*
Ga0101646_1009039	Ga0101646_10090392	F004325	MKHKKKASTTEKADKFLQGIGTAGGPIGSPQLIGFGGTDTMSQLAAGNRDEYANIRMREGDTRVVEGAKMPSDLDASYLKLNLPGSPLPANGLLAPQNIRAAEQTQDVIRSQEQMFVAKFIPAAGVMQLPVGQPPLESGKGKK*
Ga0101646_1009102	Ga0101646_10091022	F038110	MVEVCIPAVSEDRGHMSKVDDPESLAISIRDVSYKLMNLKIILLLIHCLVDMPTSKARLSYLVMAER*
Ga0101646_1009230	Ga0101646_10092303	F092196	MNTYRIKVKQVYIETMFVEAESKDDAIQMVWSDDCRLEGSEYKSAEADIQSVEEV*
Ga0101646_1009325	Ga0101646_10093253	F024330	MSQNDKLPAGTENYPVNNYIPKSNPNSRPKKFTKYAYVIKNQVEWDRMHKRYVVLEGKGKQETQPIPLLHKDNRKAYEDACDVCGWNYKDKEARTLYVTDGTYISPTAIKRMRELP*
Ga0101646_1010695	Ga0101646_10106951	F067211	MSFLEPVIASLLGAAVTALAVFLKKNMTAVALLKYGPLVQKAYDIIDPVLDKNLSNWDGSKVDRAFELAVESVADGELSSAEIKKLAVHMAQSWLPGAAAEKVRLLEQNGMPLEQRKAAEDITAKVNTAS*
Ga0101646_1011532	Ga0101646_10115321	F058218	QYRERYQDALKLQRWPLVDTAKMEKEKKEKARQARLRRLYGLKDDEQLKT*
Ga0101646_1012040	Ga0101646_10120402	F016534	VKDFELDFPQVVGCLPRPNPHWIRNGGIFQKKQDFNINVDFFLGSIQFPYLKKKFFKNRLIT*
Ga0101646_1012535	Ga0101646_10125352	F020857	VNYSVPLRTGTSYSRDILVVFLQDYYALQELLMKMNFTIAVATPFVHAMTSLPATPTHSSENGFVSEPTWQRQMAKYGNLKRCESLSFSGDIESLEPSKF*
Ga0101646_1012973	Ga0101646_10129732	F015565	MLLFCAKTIVKESRKFELACLKKKKEKHFGHLATFWFGTFAMLFSATGRVFCHENTRR*
Ga0101646_1013364	Ga0101646_10133641	F007475	TTGGYVTVENLKKHEYVGAWLLEPSDKPIGKGLESWEKRWAKEKRKMQEAVEIFALYNRSTKWEGNKNIIGDFNLPQDVANFDPSVIAMTLTDSLKRDETGGLNRSGKAFNTTNRMIAMVNKLFNKAPTVLDDIKFGIVNKPLSEFTNVFEAGLLQAGDYINGELLDAAVNTSNMDAGTYNPETAQDTVVDAGLYINV*
Ga0101646_1013424	Ga0101646_10134241	F098759	PCLSLPTLVPQGYSALFVSILSGESKELITMMKARGYSSEKTSGMISIRLV*
Ga0101646_1013716	Ga0101646_10137163	F046699	MSSYRIQIRSEGKYYDGIIEAQDDVSALRQFEKKLTNGEIEAKDEPLYTPKRVFITLEELKNGTTNAYIGEASVGVQVGESGVKTG*
Ga0101646_1013755	Ga0101646_10137553	F037769	MNYIQTQTDKEDEKLLRRLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTEEESNQLIKEYDILSSTTKEVIMNPPPNFNATAPNDVKDYSANLWQARKCLSDAKKLINATALTPRDYENDEDFHEALLHRLHIAEHFISINKYIDEHLDFAKAHIPPQAP*
Ga0101646_1014567	Ga0101646_10145671	F063409	MHQYTTNKMLQTPPKQQARSQGGFEGVQTNPPCSLAKFIFNETAAVQGTIIQPCSGIVTDGIQAIMQLLQGVVTYTSPVEAFATGT*
Ga0101646_1015274	Ga0101646_10152741	F049434	MKTLEDEHYVVIKAYKFTVFEIWRDFNVLSYIACPCYPYIRVYRLYDTQLYAHMHRCPNNTLN*
Ga0101646_1016744	Ga0101646_10167441	F098759	CLSLPTLVPQGYSALFVSILSGESKELITLVKAWGYSSEKASGMISIRLV*
Ga0101646_1016813	Ga0101646_10168131	F093358	RDVSYKLMNLKIILLLIHCLVDMPTSQARLSYRVMSERYRIVCVMVSEDR*
Ga0101646_1018659	Ga0101646_10186591	F033049	VSSVEAVGSEVVYSLTDKEDLPFINHPVVQAGTNMGSANSNKALKSRGLMLKRGQALYAAVSGSTALTNGFYVGVQGGFY*
Ga0101646_1018835	Ga0101646_10188352	F038110	MIEGCSPAVSEDRGHMSNVNGPESLAISICDVSYKLMNLKIILLLIHCLVDMPTSQARLSYLVMAERYRTVRVMVSEDR*
Ga0101646_1018867	Ga0101646_10188673	F033024	PVPPQPQAPENTGDFWNNFGALTDKDPANAWRYLNQAQQTPDIFRNKMLVME*
Ga0101646_1021754	Ga0101646_10217542	F067817	MLRPNTELLTEDVMQGQPRFVDISKGTLTAETKRSRAVNKATKYKKGIL*
Ga0101646_1023194	Ga0101646_10231942	F043982	MYQILLYSSLILSTFTLILCLYACSRVGNFIRSTEGLDWANVANITGDLATLKKTIQTLNNRMNGMHSPKIAEQELLMQLMTKQQNQQVNGKIQGG*
Ga0101646_1024050	Ga0101646_10240501	F076163	SYPATPLTADIDGTNTEILLFGPDNSGSPYGVPATQANGLAAATAVTTAFSSGTIAQGESDVSVAEAPFWTAVTTSGIDDQDAANAMMYRVTADTTFKVYNVNAVTSTSVDGDGVFISSDDKDAGKAAYIICRVNYLRPAAATTFMDIVGSLDFASQVGGSDS*
Ga0101646_1024170	Ga0101646_10241702	F022150	HLVGPPFPEFKACFSATAGWHFSRDLTRRLLTDGCGQSHVSAKYD*
Ga0101646_1026712	Ga0101646_10267121	F098759	LPTLVPQGYSALFVSILSGESKELITMMKAWGYSSEKASGMISIRLV*
Ga0101646_1027498	Ga0101646_10274981	F049434	MKTLEDEQYIVIKAYKFTVFEIWRDFNVLSYIACPLYHYIRVYRLYDE*
Ga0101646_1030117	Ga0101646_10301171	F020857	YIRDIFVLFLQDYCALQELLMKMNFTIAVAPPFVHPMTSLSATPTHSVRKYGFFIEPTRWRQVAKYGNLKHCESLSFSGDIESLEPSKF*
Ga0101646_1031007	Ga0101646_10310071	F020857	MKMNFTLAVAPPFVYPMISLPAMPTHSVPKYGFFSEPAWWRQVAKYGNLKRCESLSFSVDIESLEPLKF*
Ga0101646_1031046	Ga0101646_10310462	F099447	KDADKIINHCFSDLINWTYDDEVFQLTEIFSFTDQECEQLLKEYDILSATTEEVIMNPAPNFNATAPRDVKDLAENLWQARKHISDAKKLISATALTPADYDNQESFQEAVVQRANVNFHFISITKYIDEMTEYTKGYVPPLKR*
Ga0101646_1031761	Ga0101646_10317611	F059684	QLEVAVEGRKLAYTVDFTFYKAVSCRRKQSRDTK*
Ga0101646_1032915	Ga0101646_10329151	F093358	KLMNLKIILLLIHCLVDMPTSQARLSYLAMSERYRIVRVMVSEDR*
Ga0101646_1032976	Ga0101646_10329763	F031259	LDMINADSMKIATVINRVAADLLRGPDPSIDERMPDRTEFAFKMAKEIVIEHIKEREFDDMTGGKIGRLLQPLEEQEG*
Ga0101646_1035302	Ga0101646_10353022	F012584	MKLRPVLPENTFILNEDSLPTQSDADPYGKVMVFRKDVGWTVIPLTDAVQFLAMKHTHWTFTPDFPYNKSVTELEYPND*
Ga0101646_1036086	Ga0101646_10360861	F049434	VLLVMKTLEDEQYVVIKAYKFTVFEIWRDFNVLPYIACPRYPYIRVYLLYDSDGRYQQI*
Ga0101646_1037379	Ga0101646_10373791	F022150	KRSHLVGPPFPEFKARFSATAGWHFSRDLTRRLLIGGCGHGHGSVKYG*
Ga0101646_1037435	Ga0101646_10374351	F059684	RHLTGSHMEVAVEGRKLAYTVYFTFYKAVARIRRQSRDRK*
Ga0101646_1039094	Ga0101646_10390942	F059684	LTGNHLEVAVEGRKLAYTVHFTSYKAVARSRRQSR
Ga0101646_1040239	Ga0101646_10402393	F043240	NKTGGMTPWMASTASAGALKSGESETTPPIIARLRNVTCPPP*