3300006884: Final time point T34 (1) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum

Overview

Basic Information

• IMG/M Taxon OID: 3300006884
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117890 | Gp0125668 | Ga0102510
• Sample Name: Final time point T34 (1) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 46032848
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Methanogenic Incubations Using Athabaskan Oil Sands From Alberta Canada
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Oil Sands → Methanogenic Incubations Using Athabaskan Oil Sands From Alberta Canada

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → oil reservoir → sand
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Alberta, Canada
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.65
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048134	Metagenome / Metatranscriptome	148	Y
F102132	Metagenome	102	Y
F103105	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102510_100437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae	8336
Ga0102510_109061	All Organisms → cellular organisms → Bacteria	1035
Ga0102510_121798	All Organisms → cellular organisms → Bacteria	540

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102510_100437	Ga0102510_10043712	F103105	VIPDPYNTWPVVMSTNKAAQLLGVDRKTLAKNKKMLERCSEIIGDKSKVIRDRLLKELKII*
Ga0102510_109061	Ga0102510_1090611	F102132	MSTRKVIKNLEAAIDRICEDIKDKKTGSGSDKLDSLAKLVNSYGRLIERKKEKAYDKMMDGDPKQYKRMLKAGNKDMK
Ga0102510_121798	Ga0102510_1217981	F048134	MCTEKKIQMNLAIPESYRNYLRRLAAERMMSDPSQDVTGSAIATELLLTALNEIGKFNHKEGENKNDNK*