3300006878: Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006878
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099864 | Gp0115422 | Ga0074061
• Sample Name: Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 63055768
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → rhizosphere → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001216	Metagenome / Metatranscriptome	745	Y
F004627	Metagenome / Metatranscriptome	430	Y
F008968	Metagenome / Metatranscriptome	325	Y
F028506	Metagenome / Metatranscriptome	191	Y
F038362	Metagenome / Metatranscriptome	166	Y
F059277	Metagenome / Metatranscriptome	134	N
F063136	Metagenome / Metatranscriptome	130	Y
F083818	Metagenome / Metatranscriptome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074061_1052280	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614
Ga0074061_1081621	Not Available	533
Ga0074061_1094583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	755
Ga0074061_1189643	Not Available	679
Ga0074061_1192121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	508
Ga0074061_1223551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523
Ga0074061_1239912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	581

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074061_1052280	Ga0074061_10522801	F004627	MSETPEEKMKHLDEMTLLLYVERQMDRARGLEVSAHTQECDACRTLLRALERESRLLTRAMLEEDESLPSRLAQFQERARKSMQWIWGLVFGLAATGAYALYTGYIQPWQTQLEQAGFGGSNLLGLLVFQGAMWKGWQSVV
Ga0074061_1081621	Ga0074061_10816211	F008968	VSSYPVPSCAVPVSAGMIVAVPAELLASPLKSGRNLGDADRSALVIGGTEKIRTCGAVVFCKVVAVAGAQVRRDGQVRAKGSPVHHATLGPLEGKAGPGAVGTIAGRAPLAR
Ga0074061_1094583	Ga0074061_10945832	F083818	QQAIAEQQRSLRGRWGEGSNADTENLRETLRMYKTFLDQLIGSRTSSAS*
Ga0074061_1189643	Ga0074061_11896431	F059277	PACPGDGSSCQGTCDGADTVTCHFPSAGTACGNTVKGTEKPWGPLSTTATPHLPSGSRASINHTLDVFVRNGVERRDPARAYAVASSMMRIGQTRKQWNQGTLPVPPYRTKGTQFHGYTVMSASQKQVYLTMILQPRNPRTQGAVAYNIRLSEAANGSWLIDWFTPSAFFAAKGQTPKLFAEADLGPSAGAQTLQHKSHENLIMWGVLLFLLLPAFTVATVLIVSS
Ga0074061_1192121	Ga0074061_11921211	F028506	MTAADTEIRDETEVVEGWRTEQLEMAGYGAQAAAKIARRYDIDLHIAIDLLASGCEPELALKILL*
Ga0074061_1222136	Ga0074061_12221362	F063136	VHDKIPTPDFASFSAVGSLQARAMLSRWLIAAWLSGYSHSKRNNLIIALESFEENVNKLNNYCYDEKNFKV*
Ga0074061_1223551	Ga0074061_12235512	F001216	MALILKRASVSRPSSEGSDDDYDVLADGVIVGRIMETAAAPVGTPWMWTLAFGHHEDRMPDSRLRGDARG
Ga0074061_1239912	Ga0074061_12399121	F038362	DTARRVNALVETIDDLAALVPPAALDERLQARLDEARRYKIIDAIVNIDMQDPAATLVPAAQNPADDKDGMRDFSPETVLRRRRDGFKFAHDILRPAFENRWRAADTQSVAMPAGS*