3300006747: Human stool microbial communities from NIH, USA - visit 1, subject 160218816

Overview

Basic Information

• IMG/M Taxon OID: 3300006747
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052563 | Ga0101801
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 160218816
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 118798596
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076064	Metagenome	118	N
F087336	Metagenome	110	N
F088920	Metagenome	109	Y
F089053	Metagenome	109	Y
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101801_100646	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	30782
Ga0101801_100983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	21072
Ga0101801_101148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	18102
Ga0101801_103404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4711
Ga0101801_103432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4669
Ga0101801_106489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	2181

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101801_100646	Ga0101801_10064629	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYLRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY*
Ga0101801_100983	Ga0101801_10098316	F090515	VTTCCKAGPTAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS*
Ga0101801_101148	Ga0101801_1011486	F089053	MEGPRPDKFAFGVRIGRVVDGCRPAKGCIRKWIHGFAYGQPELSTAEEVNVKNMEVSL*
Ga0101801_103404	Ga0101801_1034042	F088920	VSARPHYYLAFGAGLILHLILHFSQKAAIFAPKQVILLLFVPTLFFAGLSVFFPQTSPKISGQTSLYLPWLSPYCLFKD*
Ga0101801_103432	Ga0101801_1034322	F088920	VSANLHHYPAFVAGLILHLILHFSQKVAIFAPKRAILLIFVPTLFFACLASFSLHISPKISGQTSLYQPWLSPYYLFKD*
Ga0101801_106489	Ga0101801_1064893	F087336	MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP*