3300006716: Marine microbial communities from the Deep Atlantic Ocean - MP0441B (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006716
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054900 | Ga0005502
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0441B (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 127700093
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): -22.5716
  • Long. (^o): -36.5529
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F006551	Metagenome / Metatranscriptome	370	Y
F024127	Metagenome / Metatranscriptome	207	Y
F051950	Metagenome / Metatranscriptome	143	Y
F065861	Metagenome / Metatranscriptome	127	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005502_1000767	Not Available	559
Ga0005502_1004388	All Organisms → Viruses → Predicted Viral	2193
Ga0005502_1021208	Not Available	590
Ga0005502_1224403	Not Available	632
Ga0005502_1290299	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2	541
Ga0005502_1298912	All Organisms → cellular organisms → Bacteria	569
Ga0005502_1310839	All Organisms → Viruses → Predicted Viral	2150

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005502_1000767	Ga0005502_10007671	F006551	WAANATIDRDSSSDFDCTVESASGTIGTNGVLTDDTLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSDSGDASEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGET
Ga0005502_1004388	Ga0005502_10043883	F006550	MQAKINKREIDYEGQQLWLNPVDKTVYATDGAPTYSFSEVNGTPIYNYNSHFDAVKTAKDKLGTSYYHDAFVDQEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAAKNLAKEIAVPNLLISIDTVTKFTGMEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAVWDTFVSSTDRSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNSFLRGVASVGARDYNYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFII
Ga0005502_1021208	Ga0005502_10212081	F006551	TIDRDSGTAFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSSSSDSSEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDIKL
Ga0005502_1224403	Ga0005502_12244031	F051950	YISTEASYQLNFNVGFSTTRSDVLVHLAQ*QY***F*FAFL*SFYYFLTARVVRYGSLKMKPKMSTSFRPHGK*GDFIAAIIPAI*CVNILSNSNFILRLIE*QNESSLFTIRVRARQ*Y*VYKFELKNFTDILSAPKNIGYNK*SVNTFGDLQVAEDYLYVLQLRSQNK*VKNY*EEVLQKTEEVKKNHIVAPQEQLRLEILNKSNLNK
Ga0005502_1290299	Ga0005502_12902992	F065861	MGIVIVIRRKISLIYRKNSFIFNPPLRVVLFMIRGEIIGCNNISAAIPTLEEGLLHKNKLVLNCLT*
Ga0005502_1298912	Ga0005502_12989121	F024127	MIYKLTPKKSRDVKTLIEAETEKAAILYFAALLNLSADDLLQIYKIR*
Ga0005502_1310839	Ga0005502_13108393	F006550	MTRIFNEKKADYNGMQLWLNPVDKTVYATDGKPTYSFHEAGGYPIYDFNAHFKGQKLAKDNFGNGAYQQDAFIDSEFKNLTEEYVSDVKAGGRQRTAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSTFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVTLADASLTAKAAIGVWDTFVASADRSTNNPLLDLGIVQLLIEGSGVGGKLSRIGMHPLDFAKYTGNTFIRGVASTKPSEVTFEPGTRELPGFPNAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLASIIQSETGRQITGISTP