3300006706: Marine microbial communities from the Deep Indian Ocean - MP0958 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006706
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054903 | Ga0005505
• Sample Name: Marine microbial communities from the Deep Indian Ocean - MP0958 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 86150617
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Indian Ocean
• Coordinates
  • Lat. (^o): -27.587
  • Long. (^o): 63.1486
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010768	Metagenome / Metatranscriptome	299	Y
F061786	Metagenome / Metatranscriptome	131	Y
F063613	Metatranscriptome	129	N
F090440	Metagenome / Metatranscriptome	108	N
F090441	Metatranscriptome	108	N
F101265	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005505_1014289	Not Available	559
Ga0005505_1018338	Not Available	792
Ga0005505_1029833	Not Available	554
Ga0005505_1030492	Not Available	501
Ga0005505_1134962	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	598
Ga0005505_1203993	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	693
Ga0005505_1211407	Not Available	953
Ga0005505_1228991	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	537

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005505_1014289	Ga0005505_10142891	F101265	GGNEISGLKLATDLRLKRIYHCRVTDVGEDYVLRIIILKSIGGLIVKTNFSEIAETN*
Ga0005505_1018338	Ga0005505_10183381	F090441	KGEVWELATLSFPDSLALGALITRRVIVGCQFPDAASYRKNDCDMFRSHSGTLFQLKHWFFVG*
Ga0005505_1029833	Ga0005505_10298331	F090441	ALGALITRRVIVGCQFPDAASYRKNDSDMFRSHSGT*
Ga0005505_1030492	Ga0005505_10304921	F090440	GNEISGLKLATDLRLKRIYHCRITDVGEDYVLRIIILKSIGG*
Ga0005505_1134962	Ga0005505_11349621	F061786	NGMSCIPPEKLEKAIKKGEIPPQVQADEEDLDGNMDEVIDNCIREVWQYYDPKGVGFLNKKQTQTFFKDALNLVALRKNCKSKDLFQGRKEGAALEEAFRQVNTSGDGRVTFEQFEEFTNAYDLDEAVDFLTGGNSEHQINTQGVQMVDNSSLPSGGGPVKGKIEYRDYGALED*
Ga0005505_1203993	Ga0005505_12039931	F063613	FMYFILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLFIALGTLHDQEKQEARGSAPSQTC
Ga0005505_1211407	Ga0005505_12114071	F090441	EVWELATLSFLDLLAFGAPITRRVIVGCQFPDAVSHRKNDCNVFRSHSGT*
Ga0005505_1228991	Ga0005505_12289911	F010768	LEGDKLMKEVLNGGYNVHPVPPPNSETKERITRRYERKRIKIEKLFTLGYTTSGDP*