3300006703: Marine microbial communities from the Deep Indian Ocean - MP1200 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006703
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054906 | Ga0005508
• Sample Name: Marine microbial communities from the Deep Indian Ocean - MP1200 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79805544
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Indian Ocean
• Coordinates
  • Lat. (^o): -30.1996
  • Long. (^o): 103.1843
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037232	Metagenome / Metatranscriptome	168	Y
F037234	Metagenome / Metatranscriptome	168	Y
F074005	Metagenome / Metatranscriptome	120	N
F093997	Metagenome / Metatranscriptome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005508_1025136	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	859
Ga0005508_1197319	Not Available	566
Ga0005508_1202264	Not Available	597
Ga0005508_1209835	Not Available	652

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005508_1025136	Ga0005508_10251361	F037232	RYPRQASFVIMSAFKIYDLVNTVYGTGYVAAIRSDCYVVLLTHWKLAQGQSPTLYLQAEAMTLIPGALPGTVVKTPFGPAQLQSVRADNMHIAKPINWKLANNTIATMYLQPEVVQLTQTPGFNEGDEVMTVYGQGFVQSKREKEGDLVVLLRNWALAQGQSPTCYLHPSACVKIPGLQIGAAMKTVWGLMRLLSIRRDGTHVCEAMHWNLADGKPPRCYLAPEAFALVSIKP*
Ga0005508_1197319	Ga0005508_11973191	F093997	DVGAKVTVPRDPYPQGVQAGLDDDRSGEDKPASDKGGLKMQKKSDDDTELIEKAEHSFNTETPRPNASIENVDKSIKDSSLILKDARAEGYEGLSQVARNILNGKYYVPSDDEVRGF*
Ga0005508_1202264	Ga0005508_12022641	F037234	DYEKMMEYLKLDPETSDLTVIRIIKVRTGYRCKDIRGIMVS*
Ga0005508_1209835	Ga0005508_12098352	F074005	MVQIRTIDELEALYYGYNRNLLRKADAPITTSTVGVFNAIYGAYAWAQLNLEANAFGILPKYPWDKSGWR