3300006702: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1138 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006702
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092422 | Ga0031688
• Sample Name: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1138 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71829020
• Sequencing Scaffolds: 6
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	2
Not Available	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Indian Ocean
• Coordinates
  • Lat. (^o): -29.63
  • Long. (^o): 92.98
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000351	Metagenome / Metatranscriptome	1248	Y
F009522	Metagenome / Metatranscriptome	316	Y
F014836	Metagenome / Metatranscriptome	259	Y
F056191	Metagenome / Metatranscriptome	138	Y
F056539	Metagenome / Metatranscriptome	137	Y
F060086	Metagenome / Metatranscriptome	133	Y
F063613	Metatranscriptome	129	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031688_1007239	All Organisms → cellular organisms → Eukaryota	1212
Ga0031688_1013957	Not Available	572
Ga0031688_1019312	All Organisms → cellular organisms → Eukaryota	692
Ga0031688_1189700	Not Available	686
Ga0031688_1196474	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	608
Ga0031688_1211933	Not Available	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031688_1007239	Ga0031688_10072393	F060086	RATAGQEDPFELDSNLLLSSGRHGEDRKRQYFLYDHETPLLDDLADLLY*
Ga0031688_1013957	Ga0031688_10139571	F060086	MIIRTTAGQEDPFELDSNLLLSSGRHGEDRKRQYVSTYDHETPLLDDLADLLY*
Ga0031688_1019312	Ga0031688_10193122	F060086	TTAGQEDPFELDSNLLLSSGRHGEDRKRQYVSTYDHETPLHDDLADLLY*
Ga0031688_1157077	Ga0031688_11570771	F056539	KTQLILLFACLISLAAAQLALVNPVGRGFSFGDARHGPCGQSPTEVGNRIAWEQDTVHEIEVQIFGAAGGGVIVDRYSCVLNGDDENPIEPILPIEGALKVEVPDVDDQIYRLYVRTPSFRCTGDVTMQLVYATENGHEFFQCQDIVLTYSGASSLTMSVLAVIAVVLMVL*
Ga0031688_1189700	Ga0031688_11897001	F014836	GMNKLVVVFLLAALSSLALAQCPLERNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031688_1196474	Ga0031688_11964741	F063613	FILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDS
Ga0031688_1206889	Ga0031688_12068891	F000351	QKVLELLGDMLAKGKKEKNAEEVRFSAYTQFCANQDRIKSEAIEKADMRIEELKASIQKAEADAATLAKEIAQLDEDISVAEGNKKAATEVRERENADYLTTHKDYSESIDALERAVATLKKQAFDRSQLLQVTQSSLIPEHAKKVISAFLAQGDELGDDPMDVTAPQANAYEFQSQGIVDMLDKLHDKFEDERTDLEKEESEARHAYEMLMQDLTAEIETKTD
Ga0031688_1211933	Ga0031688_12119332	F056191	VLTAEMSETFPSGGSIHASVKLEGIDGRAPQERVEHV
Ga0031688_1214901	Ga0031688_12149011	F009522	LARFQCNLRSLSLRAMAKAMRAAKAMKAMKRVSKFAKGRMAKSVVFRGTKTATTGGLTKANLMKNKNGKIVSKAMSANGKKAYARIKGWTVAVTKARKALGVKGFLAVKKGTPLYKKAKEFYGK*