3300006696: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP2498 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006696
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092408 | Ga0031674
• Sample Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP2498 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73533930
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: East of Antigua and Barbuda, Atlantic Ocean
• Coordinates
  • Lat. (^o): 17.43
  • Long. (^o): -59.83
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006551	Metagenome / Metatranscriptome	370	Y
F037232	Metagenome / Metatranscriptome	168	Y
F037234	Metagenome / Metatranscriptome	168	Y
F042932	Metagenome / Metatranscriptome	157	N
F065855	Metagenome / Metatranscriptome	127	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031674_1159146	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	924
Ga0031674_1171128	Not Available	575
Ga0031674_1172920	Not Available	521
Ga0031674_1176029	Not Available	569
Ga0031674_1179697	Not Available	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031674_1159146	Ga0031674_11591461	F037232	ASIRPPSSLVTMTAFKIYDLVNTVYGTGYVANIRSDCYVVLLTHWKLAQGQSPTLYLQADSMSLIPGALPGTVVSTPFGPAHLKSVRADNMHIAKPLNWKLANDTVATMYLQPEVVKVTQTPGFNEGDEVMTVYGQGYIKAKRENKGDLVVLLRNWALAQGQSPTCYLQPSACVKIPGLEIGAAVKTVWGLMRLLSIRRDGTHVCEAMHWNLADGKPPRCYLAPEAFALMSIKP*
Ga0031674_1171128	Ga0031674_11711281	F037234	IDRQCLELDPKPSDLTIIRKNQKVRTDYRSKDIR*
Ga0031674_1172920	Ga0031674_11729201	F006551	TVESASGTIGTNGVLTDDTLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSNSADSAEIGRLFALDTSDAEGYGYPRIGIQIAIPTEYYEATRRTPAYPFVNNAFVEKGVYRTMGETVCRHF
Ga0031674_1176029	Ga0031674_11760291	F042932	EEQVDQEAITKSDEEEQISYENTVAKSIDTLADVVQSIAESQQGVEKAITEMHNRVKALETPTDLPLKPKGTQGGDDVGAKVTAPNDPYPVGQQAKLDSDRTDRNPPKKDPAGLKMQEKPVNKAEEEVVESYEPEMVTKSNHEFSTETPRPGSAIETVDKSFAKDFSPILKDARAEGYEGLSKVAQNIL
Ga0031674_1179697	Ga0031674_11796971	F065855	VLQDSIQVASTKIEQRQSFDVIDIVETNTAQAAIAVWDTFVASTDRSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNSFLRGVASVGARDYNYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQAE