3300006695: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP324 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006695
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092416 | Ga0031682
• Sample Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP324 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72057738
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Ophiocordycipitaceae → Ophiocordyceps → Ophiocordyceps polyrhachis-furcata → Ophiocordyceps polyrhachis-furcata BCC 54312	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: East of Recife, Brazil, South Atlantic Ocean
• Coordinates
  • Lat. (^o): -9.13
  • Long. (^o): -30.19
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000073	Metagenome / Metatranscriptome	2639	Y
F000080	Metagenome / Metatranscriptome	2485	Y
F001159	Metagenome / Metatranscriptome	762	Y
F007073	Metagenome / Metatranscriptome	358	Y
F013050	Metagenome / Metatranscriptome	275	Y
F030135	Metagenome / Metatranscriptome	186	Y
F043350	Metatranscriptome	156	Y
F051950	Metagenome / Metatranscriptome	143	Y
F063613	Metatranscriptome	129	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031682_1003212	Not Available	739
Ga0031682_1093375	Not Available	578
Ga0031682_1107135	Not Available	539
Ga0031682_1109239	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya	577
Ga0031682_1141887	Not Available	873
Ga0031682_1164952	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Ophiocordycipitaceae → Ophiocordyceps → Ophiocordyceps polyrhachis-furcata → Ophiocordyceps polyrhachis-furcata BCC 54312	645
Ga0031682_1172381	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	626

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031682_1003212	Ga0031682_10032122	F030135	LATLSSFTDIGHSTFVGCQFPDAILPGEEAIDLVAGPLN*
Ga0031682_1050248	Ga0031682_10502481	F000073	RDQSKVAKDGITEEDKKAFSLTGGKVSTPTESLKLKDTFVSWMDAKKELRTICDDGKGKLQWEREIPQEALDNLNNLATTDFKANLGKIIHDIYLTGHNMFKDMPQGDHKKRAKYRFASKTLMRILPNELKTEVEGLIAGKTMTLDLYEILGQCTWGQGKSL*
Ga0031682_1093375	Ga0031682_10933751	F051950	TTRSDVLVHLAQ*QY***F*FAFL*SFYYFLTARVVRYGSLKMKPKMSTSFRPHGK*GDFIAAIIPAI*CVNILSNSNFILRLIE*QNESSLFTIRVRARQ*Y*VYKFELKNFTDILSAPKNIGYNK*SVNTFGDLQVAEDYLYVLQLRSQNK*VKNY*EEVLQKTEEVKKNHIVAPQEQLRLEILNKSNLN
Ga0031682_1107135	Ga0031682_11071351	F043350	EGFVVTLVPMSTSMYSGEADTTPKQVMRNEYVKYRMQTSFGQKVDLLDMADGILLQWYSGFDAALCVNTDVSSKACTCDNIPADDYPNVLDTKKDAGGLLVSAWQTYWNISGNFFPSTFPVRCQACGKNVILPDGTRGDVPCASEEETWYVPSMNRTDKGANPAAVVSEHNTKMEAYTQ
Ga0031682_1109239	Ga0031682_11092391	F001159	LTQFSLFATFHGLAVKIENAMMIATTSMNFAPMLAILFIGARMRALQMDPVNGNPQKWAQNCFFMCTYAVLAQTCLAMAVPLVLRGEAKVGDKGEGDMEFTVENKLLGTVLAIGRYVIMFCIYIGFSCVIWSIFTIEHPKGPQYTPPISVTMQCVINLTVQFFFIYLWIWAAITIKEFTGFEWALMMQTMEN
Ga0031682_1141887	Ga0031682_11418871	F007073	GMKLVLLLLALFAVTYAVDAPGEGSVGSPDQVTNPADWHGTWSANNRYGGHMYACPHGNRLYGVYSNAGFFIGRIEGRTVEGTWYEGGRGDRNDWQGSFHIELSADNREFDGYYYRVSQDGAEIRWREERLGAPWPSNPTNVQCLVPGRESVLGKFYNHPGAGRTPAGYALCQDKYDQIYGSFGSPDGFVEGWSVDSSTGFHGYRYDSNGRSGAYILRAVSDNEVRGFYWRGRLARQNIETSVEEVLTRTSFNAHLDECERVGPGFLRRLRGPSNSAGALTFSVLAIVASV
Ga0031682_1163854	Ga0031682_11638541	F000080	MTFWQENYSFIKEIYDMRHTKMAEWMENVEKSISRIMADKVYTSAEFKRERDNFHALCKDLERSDIKKWLVNILEILMAERSKDEKTMQNQKLEALIKKHEDLIPTVSKTQVKVDLYWKCYAFGDELKPHIEFLDGIMLSSTRDIAPSCIENVEELIERQEKSLTQLETKRSIVQDLITKGKQLMENPDKPKFLDGHVGRIKEGWDETKNKASARLELLYNTKAAWEGYATGLETIVVEFEKGEEEIKKVKKRFNLDAAKDDLAKRQKIFNDTKNTIEGMFGEIQHNYDVMTMTLPEDKKDFVKKEVKAIQEKLEVVTRFKEKVDKIDEFVLALDNFDKSLKMVDSWMKEADNQLNDIKNNSDTMTPEDRVSCTMELQEDVVAKVEIVVAAIKTENDLLPQ
Ga0031682_1164952	Ga0031682_11649522	F013050	MSKGKQPRTRVKVPKLLLSEIKKVFIKVDKEIGLEAAII
Ga0031682_1172381	Ga0031682_11723811	F063613	YFILLTMNLITSLLKERGSERSASLFVGLALEGRSGLLALVVGGSTDLSLLLESLDGILVLPSDLVRQTTEASEVATRSESQHTEGLRADHTVDLIVRRRNSLEHLQVSESGGTTSGLVRKHSTDGSPEDLRGSAEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDILTTNNNDLLSGQELLGNSGSETAQKVTLSVNHNSLLKHA