Sample 3300006670

Overview

Basic Information
IMG/M Taxon OID	3300006670 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117429 \| Gp0125108 \| Ga0101737
Sample Name	T14 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times
Sequencing Status	Permanent Draft
Sequencing Center	Shell Corporation
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	65461916
Sequencing Scaffolds	9
Novel Protein Genes	9
Associated Families	6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1
Not Available	5
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	UK (Newcastle upon Tyne)
Coordinates	Lat. (^o)	54.971158	Long. (^o)	-1.703654	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F048390	Metagenome / Metatranscriptome	148	Y
F054136	Metagenome	140	Y
F064732	Metagenome / Metatranscriptome	128	Y
F064746	Metagenome / Metatranscriptome	128	N
F080090	Metagenome / Metatranscriptome	115	Y
F102132	Metagenome	102	Y

Family

Category

Number of Sequences

3D Structure?

F048390

Metagenome / Metatranscriptome

148

F054136

Metagenome

140

F064732

Metagenome / Metatranscriptome

128

F064746

Metagenome / Metatranscriptome

128

F080090

Metagenome / Metatranscriptome

115

F102132

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0101737_107175	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1597	Open in IMG/M
Ga0101737_114441	Not Available	1002	Open in IMG/M
Ga0101737_115274	All Organisms → cellular organisms → Archaea	962	Open in IMG/M
Ga0101737_117820	Not Available	864	Open in IMG/M
Ga0101737_121058	Not Available	769	Open in IMG/M
Ga0101737_122712	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
Ga0101737_122794	Not Available	727	Open in IMG/M
Ga0101737_129354	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	606	Open in IMG/M
Ga0101737_135732	Not Available	523	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0101737_107175

All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon

1597

Open in IMG/M

Ga0101737_114441

Not Available

1002

Open in IMG/M

Ga0101737_115274

All Organisms → cellular organisms → Archaea

962

Open in IMG/M

Ga0101737_117820

Not Available

864

Open in IMG/M

Ga0101737_121058

Not Available

769

Open in IMG/M

Ga0101737_122712

All Organisms → cellular organisms → Bacteria

729

Open in IMG/M

Ga0101737_122794

Not Available

727

Open in IMG/M

Ga0101737_129354

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.

606

Open in IMG/M

Ga0101737_135732

Not Available

523

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0101737_107175	Ga0101737_1071751	F054136	VYIFSGAAFLWHGLKDATKDIDICCSYEDADRIVSALRMFANMESVTGINDVHFLRIIFKSFGLQIFIKGIWMGDEYQLLEAAPCDSLTFDGVTFLIPNVKTLIMIRDRQIQALYKEWKKLKGEKCT*
Ga0101737_114441	Ga0101737_1144412	F048390	MVRFVRTLQHRVTPKGRDFYALSIPPQVAEALNLKAGGAVSICVNPVKKGTFEVTIKAVSDELS*
Ga0101737_115274	Ga0101737_1152742	F064732	MEAAAEAAVAAAPEKCTMPPAQSAERNVKFPSSPMDPGPYIAAIATRSTSQQDPVPPGH
Ga0101737_117820	Ga0101737_1178202	F064732	MEDTEAEAEAASTEARERCMMPPAQSAERHVRFPSSPMDPGRFIAAIVTRSTSPPGRPEDTDQIDALSDLFLSEYHLMGI*
Ga0101737_121058	Ga0101737_1210581	F054136	MIENKAQLLADLAYVGSKVQAKNNVYIFAGAAFMWHGLKDATKDIDICCSYEEADRIVSELRMFGNMESVTGINDVHFLRIIFKSFSLQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPDVKTLIMIRDRQIQALYNEWKKLQGEKCV*
Ga0101737_122712	Ga0101737_1227122	F102132	METQKVVKNLESAINRICKDIKDKKGGSGADKLDSLAKLVNAYSRLIERDREKEKEIDPMEDGDPTYYKRLEANNKDRRGIIR*
Ga0101737_122794	Ga0101737_1227941	F064732	AARERCTMPPAQSAERHVKFPSSPMAPGQCTAAIATRSTSLPGRPEDTDHLMGLKSDRVSQ*
Ga0101737_129354	Ga0101737_1293541	F064746	LYAVMACGCLDTAQFKKSVTIDGHTFTAVLDDSWTNTSGEVATYVPTNLENQYGIPTGAYDWTGFEDYDAFSYRSGEPSGSVTKYGWAHIFVLKPKKDLAGSSSTDILKHAAYLTINPQNHRNAVLGDDLTEKEIEYNGKEAYLVEVEGELITPANGDDFINDNSYGAIAFFLDDDTAALIDVETTNNFRMSSKEVIDSIT
Ga0101737_135732	Ga0101737_1357321	F080090	MPSPCDVLETEEHWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISR

Scaffold ID

Protein ID

Family

Sequence

Ga0101737_107175

Ga0101737_1071751

F054136

VYIFSGAAFLWHGLKDATKDIDICCSYEDADRIVSALRMFANMESVTGINDVHFLRIIFKSFGLQIFIKGIWMGDEYQLLEAAPCDSLTFDGVTFLIPNVKTLIMIRDRQIQALYKEWKKLKGEKCT*

Ga0101737_114441

Ga0101737_1144412

F048390

MVRFVRTLQHRVTPKGRDFYALSIPPQVAEALNLKAGGAVSICVNPVKKGTFEVTIKAVSDELS*

Ga0101737_115274

Ga0101737_1152742

F064732

MEAAAEAAVAAAPEKCTMPPAQSAERNVKFPSSPMDPGPYIAAIATRSTSQQDPVPPGH

Ga0101737_117820

Ga0101737_1178202

F064732

MEDTEAEAEAASTEARERCMMPPAQSAERHVRFPSSPMDPGRFIAAIVTRSTSPPGRPEDTDQIDALSDLFLSEYHLMGI*

Ga0101737_121058

Ga0101737_1210581

F054136

MIENKAQLLADLAYVGSKVQAKNNVYIFAGAAFMWHGLKDATKDIDICCSYEEADRIVSELRMFGNMESVTGINDVHFLRIIFKSFSLQIFIKGIWMGDEYPLLEAAHSDSLSFGGITFLIPDVKTLIMIRDRQIQALYNEWKKLQGEKCV*

Ga0101737_122712

Ga0101737_1227122

F102132

METQKVVKNLESAINRICKDIKDKKGGSGADKLDSLAKLVNAYSRLIERDREKEKEIDPMEDGDPTYYKRLEANNKDRRGIIR*

Ga0101737_122794

Ga0101737_1227941

F064732

AARERCTMPPAQSAERHVKFPSSPMAPGQCTAAIATRSTSLPGRPEDTDHLMGLKSDRVSQ*

Ga0101737_129354

Ga0101737_1293541

F064746

LYAVMACGCLDTAQFKKSVTIDGHTFTAVLDDSWTNTSGEVATYVPTNLENQYGIPTGAYDWTGFEDYDAFSYRSGEPSGSVTKYGWAHIFVLKPKKDLAGSSSTDILKHAAYLTINPQNHRNAVLGDDLTEKEIEYNGKEAYLVEVEGELITPANGDDFINDNSYGAIAFFLDDDTAALIDVETTNNFRMSSKEVIDSIT

Ga0101737_135732

Ga0101737_1357321

F080090

MPSPCDVLETEEHWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006670: T14 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences