3300006615: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ04 time point

Overview

Basic Information

• IMG/M Taxon OID: 3300006615
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114916 | Gp0124979 | Ga0101438
• Sample Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ04 time point
• Sequencing Status: Permanent Draft
• Sequencing Center: Australian Centre for Ecogenomics
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 142944013
• Sequencing Scaffolds: 36
• Novel Protein Genes: 50
• Associated Families: 37

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → Viruses	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → unclassified Ostreococcus → Ostreococcus sp. 'lucimarinus'	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → alpha proteobacterium HIMB59	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86B	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008747	Metagenome / Metatranscriptome	328	Y
F011904	Metagenome / Metatranscriptome	286	Y
F012717	Metagenome / Metatranscriptome	278	Y
F017400	Metagenome / Metatranscriptome	241	Y
F019562	Metagenome / Metatranscriptome	229	N
F025308	Metagenome	202	N
F028183	Metagenome / Metatranscriptome	192	N
F032291	Metagenome / Metatranscriptome	180	Y
F033050	Metagenome / Metatranscriptome	178	N
F035364	Metagenome	172	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101438_100054	Not Available	3417
Ga0101438_100055	All Organisms → Viruses	3386
Ga0101438_100585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8113
Ga0101438_101290	All Organisms → cellular organisms → Archaea	21070
Ga0101438_102709	All Organisms → cellular organisms → Bacteria → Proteobacteria	8482
Ga0101438_103154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	15262
Ga0101438_104660	Not Available	79248
Ga0101438_105845	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → unclassified Ostreococcus → Ostreococcus sp. 'lucimarinus'	45429
Ga0101438_106753	All Organisms → cellular organisms → Bacteria → Proteobacteria	27257
Ga0101438_107470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2465

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101438_100054	Ga0101438_1000546	F039118	METQGCSDMTEIETETKTEETASRTQRFAEWLMKRDERRQEKETSLEGLMKFNIFLSTLTLVSVAGATALDYAMIAWLWV*
Ga0101438_100055	Ga0101438_1000553	F039118	MTETENETVIEESKTTTRTQRFAEWLMARDERRAEKETSLEGLMKFNIFLSTLTLVSVAGATALDYAMIAWLWV*
Ga0101438_100585	Ga0101438_1005853	F081298	YQPIQSKSIFIANDVDVRFAELVHKRFFHEIKTEQKIDILDLKYYEKPFFSGIGARPTNLEIYYDLSYRLGNENKIQNINVKDNVYVNEFNPIAQNNAVSQISYELMNQLIDELIMKVRN
Ga0101438_101290	Ga0101438_10129010	F008747	MAPVEESIARPAGSEGETAQDVGVPPLTVGVTVVIAVPFVRVCEFGL*
Ga0101438_101290	Ga0101438_10129012	F008747	VTAVGVPLIAPVDESNDKPTGREGETDQDVMVPPLTVGVVVVIAVPFVNVNEFGL*
Ga0101438_101290	Ga0101438_10129013	F008747	VTAVGVPLIAPVEASMASPAGSDGETDQVVTVPPEEVGVAVVIVVPFVSVNVLGL*
Ga0101438_101290	Ga0101438_10129014	F008747	VIAVGVPLSAPVDESSAKPAGREGLIDQDVTSPPLLDGVTVVIAVPLVKAKELVE*
Ga0101438_101290	Ga0101438_10129015	F008747	VTAFGVPLMAPVEESKDRPEGRDGDTDQDVIVPPFTVGVTVVMAVPLVRVNEFGL*
Ga0101438_101290	Ga0101438_10129016	F008747	VTAVGVPLIAPLDESSDKPAGSDGETDQDVIVPPFTVGVTVVIAVPLVSVNELGL*
Ga0101438_101290	Ga0101438_10129017	F008747	VIAVGVPEIAPVDESRESPAGSPGDTDHEVTVPPLNVGVVVVIAVPVVKVNEFGL*
Ga0101438_101290	Ga0101438_10129019	F008747	VAEEDTAVGVPLIAPVEESKDKPAGKEGETDHEVTVPPVIDGVTVVIAVPLVNVNEFGL*
Ga0101438_101290	Ga0101438_10129021	F008747	VTAVGVPLIAPVDESNDKPAGREGETDHEVIAPPFAVGVAVVMVVPLVREYEL*
Ga0101438_101290	Ga0101438_10129022	F008747	VIAVGVPDIAPVEASKDKPAGSDGETDQEVIVPPFTVGVTVVIAVPLVRENELGL*
Ga0101438_101290	Ga0101438_10129024	F032291	VTAVGVPLIAPVDESKDKPAGSEGDTDHEVMVPPLTVGVVVVIAVPLVSENELGLYVSDDGATSLTTMVTVAVSLPPVLLAVMV*
Ga0101438_101290	Ga0101438_10129025	F032291	MAEGVPEIAPVDESKDKPAGSDGDTDQEVIVPPLTVGVTVVIAEPLVSVNELGLYAKDDGATSLMTMVTVAVSLPPVLLAVMV*
Ga0101438_102709	Ga0101438_1027093	F035364	MLGLSKASKAKKVYDSIESQLSSIKDWANSDKLPKKMWIDPYMIGYFFKTVALAELIINRKPYSATPDQMIIKLCFEDHICPESFKDFEQNLFDLMDKELKAKKSGALKFDDLGNHISSNVEKDVDEFLLGNRHASRIIFLLGGVLKEEIIQKDHQILEAKKITEENKEMDEAAAKKLGLKSRNMLPFYLSKIYLKERIEKLSSN*
Ga0101438_103154	Ga0101438_10315414	F105107	MSNFFSYIYKHIFLRCFFISLLTLLVFFVLDFVISLITESSGFSMLQIQNTAIESFEGLLSYFEMIMLLSVLITLSIFKQANNIAILQSFGQSPLKISMIAACAPLILSFLFIGFSLLIPSNDVDTYPQWELEDQSISVLQKDKVISIDFSSNKINKVLSTTPNDLSANTEPSSVLQKMSSRTLSLPFATLALVLLASIFLYKHQRNFSISQSIFFGIAAGFGYKLISDLFYLGFRSFD
Ga0101438_103649	Ga0101438_1036496	F032291	APVELSNERPDGSDGETDHDVTVPPLDVGVTVVIAVPLVNVNEFGVYVIEDGATSFTWIVMVVVPLPPGLVAVTV*
Ga0101438_104660	Ga0101438_10466035	F106116	MSKLDINEDGVVDIEDVKHLLLRYEIIALGGALLIVLPVLNTLNYISVDSNFFWILCGVVMLTEGLVEIRHEKKRMKTPKGGKNK*
Ga0101438_104977	Ga0101438_1049779	F082635	MKSIFNLVCLAIVILASHYASANQNEFKINAEIIDYDPSKKIISLDGAISMTSDDFQISGITATISMNEEVISIEGNPARINLENPEKIFGEAKQIKYTPAKEISLVGEAVLRTKDGELKSKKILYQLGGSN*
Ga0101438_105845	Ga0101438_10584522	F087146	MAKESTPLVIDASETSSIGYGDVHRPRRRRSAMTSVAAVGVISFSVGILLILAGGRSSDEHARVGGILNWVFRGRVRPEVTFTLDASWIDQRLRAANPDFFTSPISDGFIVRHNYNSHLFFPRKNMVKMTRIGLRKWTVTTRDVNYEYGFALGNEAGEILREIGPWVTTKQHGPKSGNGEFMDACTVTFWPYRNRLIPQKPNAAPGPLNVTACFASCTKTCELPNAPTPLASLDASQYTGGNTWGNAQISCNLGSQTTYNSTMNGMYINGNRQSVITCPYEIGPARYPNLTMEVVFQLDTTYDPTASYGWIFGHDDGGYDRSFIISDTRFGGGIGSGIGAVYDSGAATPSNGVWHHGLAVFRQGIVDGSYTALDGAISPVKATANNNEGEPDFTVGGLANDFGFPHEMKGWIRYFNFYDGALDESQIEAMYVRNTPWP*
Ga0101438_106753	Ga0101438_10675319	F048559	SNWSTCSDAVEFQTTQYVYDQPLIPKAADGSVIDISPTMKMKYTHEIENDLNYNSGTPIQIPATFNQNDWIEWLSKPCTPGMSGDLGTDGDDSTCQITVDLTKFDDKTFNVRYDGELNDLPGYYDQGASTFFRLINPKDGQIFTNMADDKTYKYKALGIDEVFVPTTAASCDASVKFTDLLTGFTDSDLPSYTNTSTYPRPSQKWSDKPSAPSCILEGDVETDCD*
Ga0101438_107470	Ga0101438_1074705	F033050	VKLILHQASLNGNAQQQQWKITFKYIIGSKNLDKLANEPVDYIIDQLIYKRRLF*
Ga0101438_110180	Ga0101438_1101804	F011904	MSFNPPEGILDIGNATLRVGKLEVAETTGLNQGLQNIVKNDLLITEKETYLANKTWGIKLPTAWVGEFDLKTHDSKYVEFNFYNEGSTSNALGYTLNFKDTTLTLKYDNGNSNLASETIPDVSTSTYKKVNVFFERGVIAVFIDGARVLYFKESDTYNSVHGHPGMASRVASTTGGSFVNIFIEEDGSDSAVKDLRIVNGRLISDKTSNVSFIGSLGVGVNNPKESLDIRGNMHFNRVSNVSQVSVDSNVVTEYTGPHXXRSTPAEVPGGGFNRR*
Ga0101438_110555	Ga0101438_1105556	F078668	MSKIFTDSSTDDVWSGNVLTDSIAGQSIGILIPNSTLTFAQAEYEAGCMAWRLQNAQSLRVSARGWGVKAGQNCMGESQISAVRVAPNDILTVYPLPVDGTAQKSNVLAWVTTTKGTELFKGLAVADNTATALVTAVNGQGLGDAFFNSTLQSLSVQCEDGCTLDSIQIIDEMGGVVFTAQGNVRGATTPAAKSNEYNLDLPRLAINIGKGWSFKVITVSE*
Ga0101438_111439	Ga0101438_1114396	F083429	MARRRKTSGKTTFGKAFRKKSSSGKFKKGTMIRYKYVNGRRVGAEKTRK*
Ga0101438_111649	Ga0101438_1116493	F047721	MSYEDLKEYLKQEHIQQIFKMNICRYSDNNGAKDQFTEWARDPNITGNGGFKTYGKARTDYDKREDDKEKNKNKS*
Ga0101438_111733	Ga0101438_1117333	F087145	MKQSIYLFFLLILFNYSLANASEKISLISLNDIKIIFSSSSKTWNQNLVFLDKKSSMKKLQLENHNNYSLKSTFKNGYVLLTPYFEKGLVETLNINYYFNNIDQNTIDLIFNHFQSLDVNFCNYIKTYKNDIFIDIKNC*
Ga0101438_113259	Ga0101438_1132592	F084187	MNIPESPKFNHYIFFALVILDVFFLYNLIQYIRFGLDTHLYGFLISLGAGIIILIYLWKNDYFPKHDNN*
Ga0101438_113684	Ga0101438_1136843	F084186	MSVMHDLERPLNDLKEIKSLLGAGANIGAMNKIDKTITEYQLEVEEFDKWAEAESQKDAYLEGMVVSDSSDSPFLAHPGSFPGEEIK*
Ga0101438_114328	Ga0101438_1143282	F017400	MDKETQIRQGKRAEQLLNDPLLKTAFEDLLEIYKQEIFNTKFTEDDKRTYLWVAYNLVDKIRGHLQSIMTSGKLSQDEIDXYHV*
Ga0101438_114803	Ga0101438_11480315	F067706	MSKRYGSYQDDFELDCEWATLDVTVHWTLDCDDYQDLVSIDKITVGDKDLHEGWNMDYFESLIWDNVYEGNQ*
Ga0101438_115216	Ga0101438_1152164	F088930	MKVIKVISISTFLFMVCLIENYLNTFISLDFGVYIFLISLIYIGTEFFNQNLVIPIFLSGILYDSFFSTYYLGLYTSIFLVVVVLSXXHHYFIMFINL*
Ga0101438_115280	Ga0101438_11528013	F056587	SFFIFISLKTYAIQIVGSEKLCQDLIILMGNNDDDLEVLYNDLISGQLVEEDRFKKMKEIENYVLKISTLYHNLC
Ga0101438_115293	Ga0101438_1152938	F050751	MASLTKIGVKCFGPFSPKEVNDASAWAATVQGLIQAVADSNSTSSVIDTEVFPVLGNVFVMVTYQLA*
Ga0101438_115943	Ga0101438_1159431	F025308	SQGSKKILEIGTGTGKSTAALRLNAEVYTIDRNDIFEYNIDCYRFICESKEYWLDHMHYDFDFVFIDGSITKLDCEEILKRTKDSFKIVFHDYIPGEKDRNTNKGYYNMKVFKECALEKYDMIQHVGGSHCGIITLKKDK*
Ga0101438_116219	Ga0101438_1162191	F044540	TINATIINGATETKADADKLHQGVTDEFNATILTGNNCTSVNVKIKAKK
Ga0101438_116485	Ga0101438_1164859	F077261	MKNRIFPPKKDLYPDGICPKHLKKLIPCIVQNFQGCISPHPNPGVHVIYKCPDCWNNLQEVRRGKSVPPIR*
Ga0101438_117430	Ga0101438_1174304	F057388	MIKRFLIMFLIGFTXXXXXXXXXXXXSSGTYFGVSKNIGFLFMNSPLNFGFQFSERGGSSINLNDYLLDGNSSVENSTLDVLMRHSYFDVFVNANISIGNVSLYLGPMVGINLSSQVSDLDSIVLPAIYDFKPSDLDAKQFDMGMNYGLTFHVNRFIGLSLETYQGLPDKNEQQFTNYGLKLSIGL*
Ga0101438_117488	Ga0101438_1174882	F012717	MLALQNVVDLVKDDFYQKNIKDKCHDFFYSSALTHAISLEIASSTFADKCLSYEMLCKRIPPKLGCRSTIYSTLNNAVSKGFFIKQYSKKDRRVRSYCLSEEYSLMLTRWYLRSKEIFF*
Ga0101438_117595	Ga0101438_1175952	F040851	MDKWAEEVKNYRNWFSLVKVNCIRLDTGEVLIGWVKKLWNGDYRIEDAHICISEVKDGNMETNMAPWIPFAKEYTFVIKKGLIQTVFEAKPQLETNFKIATGNNSIRGQVRK*
Ga0101438_118632	Ga0101438_1186323	F078834	VESATRKVNGLLTAFLWFIALVCLALPAWLLYNSWNKGRLLNERLENCDDGLLTDSGVKVIQVMSAPLGTTVTENATLVAVP*
Ga0101438_120013	Ga0101438_1200132	F019562	MWYHKKFKLQYDTNVFNEIIEYAERATWRQGYDQNGLLWNVEELPLNPKQFPILNELYEGLNTEFKRPSFFISNVKPGGLVNHIDHNKWGNLGIPLKGDFEKTPQYFYDQFNHPVESFIVDSPVIFNTRMLHAVPRELTDTGPRWVLMMDLFEWVDKLFDKIDKKTXD*
Ga0101438_120013	Ga0101438_1200134	F028183	MTPEIRLTSLEETRSAPYCRELKTLWYDREYLLDHLENIDENNWYLFDCGHIRWTVQEAFNARRECKNYPFSEFHYELINLFTPAISFDTVLYTQTAIGGAPPHQDRNRPTALNFAIRGEFSDTSPQVFYDSFDRSTEKYRMTYEKNDITNEFAPWIFKGPEIHGVENKTEKNRIIITCAWRHNSYEDIEKRLLDGTXSKLGTE*
Ga0101438_121817	Ga0101438_1218177	F066916	MEIINLIFFSTIITIFFIIYNEYSVGQILLRPDSTGKISINLNSLFGYLMNPFYKRDLWTWNTLDINYAFVLIYSFFIYFIF*
Ga0101438_122274	Ga0101438_1222744	F047912	MANLEDKVESLDERVKLLEQAVFELSIMAKYLKYAFFAMVASLGIDVGGLI*
Ga0101438_122667	Ga0101438_1226673	F052890	MNKLDTLHPTEVYPDYLVDPSIMDSIFEETEEKRKVIYYGYTDTNHHTDFIKDISSEFLTMNGHKHNPDIWYMDVIRYNLQDEEKRVKSGLAWHVENDNYPNVITVLMYLRLDEGIIDGNLRYKDKENVKKVLEIKGGTTVIMDGNVPHKPQDPYGTGKRDLIIVSFKKD*
Ga0101438_124513	Ga0101438_1245136	F039118	MDETETVIEESKTTTRTQRFAEWLMARDEKRQEKETSLEGLMKFNIFLSTLTLVSVAGATALDYAMIAWLWV*
Ga0101438_125091	Ga0101438_1250911	F036689	MKDLININNELSSLLQTFVEEIAEKNSFEVAEWLKENDIKAANDIRLIKNYARRTFQLFREQWMRGGYEDYWEARELTKKNFRKADTELSKILRALRD
Ga0101438_125290	Ga0101438_1252902	F076158	MKDNIHNKSMKQRGIQRWPLISASHRGAYADYLNTDKYREVTALNTVIYGKK*