3300006562: Marine microbial communities from the Black Sea in Odessa region - Od_2

Overview

Basic Information

• IMG/M Taxon OID: 3300006562
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117798 | Gp0124962 | Ga0101390
• Sample Name: Marine microbial communities from the Black Sea in Odessa region - Od_2
• Sequencing Status: Finished
• Sequencing Center: Hellenic Centre for Marine Research (HCMR)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31351919
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Investigation Of Black Sea Water Bacterial Metagenome
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Investigation Of Black Sea Water Bacterial Metagenome

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine neritic zone → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Illichivsk, Odessa region, Ukraine
• Coordinates
  • Lat. (^o): 46.302094
  • Long. (^o): 30.668915
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008422	Metagenome / Metatranscriptome	333	Y
F015595	Metagenome / Metatranscriptome	253	Y
F017555	Metagenome / Metatranscriptome	240	Y
F021995	Metagenome / Metatranscriptome	216	Y
F026012	Metagenome / Metatranscriptome	199	Y
F026265	Metagenome / Metatranscriptome	198	Y
F028043	Metagenome / Metatranscriptome	193	N
F033025	Metagenome / Metatranscriptome	178	Y
F066764	Metagenome	126	Y
F070091	Metagenome / Metatranscriptome	123	Y
F070191	Metagenome / Metatranscriptome	123	N
F088867	Metagenome / Metatranscriptome	109	N
F092018	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101390_1000190	Not Available	1263
Ga0101390_1000337	Not Available	1134
Ga0101390_1000436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1065
Ga0101390_1000618	Not Available	1002
Ga0101390_1001006	All Organisms → cellular organisms → Bacteria	898
Ga0101390_1001293	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	847
Ga0101390_1004081	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	641
Ga0101390_1004327	All Organisms → cellular organisms → Bacteria	631
Ga0101390_1004382	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	628
Ga0101390_1005214	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	598
Ga0101390_1007182	Not Available	546
Ga0101390_1008942	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101390_1000190	Ga0101390_10001901	F033025	MTFFNKEVELIIPPKKQNKTIKVKSLNGYDAIREKLDESNTLTAKTPVEQTTKPKTKISIGL*
Ga0101390_1000337	Ga0101390_10003371	F070191	LSIEQSSMSGGTRGRSFTGLFAPPKCAASGGVIQTGCQLWMIKIIGRLTRPCSGWPLPFTAHSPRGSAWCSTSRKAETMLGRSFSGKTARGPRRRGACGKGRRSTCPRFLACYSNTNKDCIERYERGEVKRRFSTQPRRVGTLRGDPRPAARCGERDVFQSNDDEYKQARLLSKSHHHYSPRAAKLNNARRAELPRGTASSAMVSPTTNLRRGPQPALIAKDGGQRLGLNLAPCGLGGLNLRKA*
Ga0101390_1000436	Ga0101390_10004362	F017555	MVQKIIDPNFHIRTFNVKCDKALSPLLKTILKSFNFKLYYYVIDDLLYLLKSNPDECDSILKILNSSVLFLQNNFHVNFFDIYLYEINIIERSKSNRFINEEPKNFQNSTYLNIKLAYQVKSIQKKFETIW*
Ga0101390_1000618	Ga0101390_10006181	F088867	MMEEDEPLSSSEAPRAPALDTEEGLSTPVAGPETPFRPTSGMPGLTPTGAHVTALQFDEEQVLRGLFCVCDELQACCEHATGMLQML*
Ga0101390_1001006	Ga0101390_10010062	F028043	MLILFTWANACEQEQVKPVDNKTIPVCEELQESTDEKPCKKPENINTVIKAIEKLGESGTLPK*
Ga0101390_1001293	Ga0101390_10012933	F008422	MGMTYQKGDVFLDKNTHKLYIFDGNEWLEIVPTSVLKKPDWN*
Ga0101390_1002364	Ga0101390_10023642	F092018	MILSIKKRVFELFLKMNFFLKIIFSAYNKKMSETTETDIKPTSKPTPNKQKIRLIFPYEQNPEFKKLGVKWDMEQKIWYYPSLDGELPDNLKPFKCYKIAINYDDKEYYKPILKSMRWDKNLKVWIVNQEDYTKFTLL*
Ga0101390_1004081	Ga0101390_10040812	F070091	MDKKTRESIVETAKHFTIGYVQWVDAVSDSGWETEVKVDVHPCLSIGFIVDETEDAICLAAVISHDQSNSRIHIPKQWIKSIKKVRLDKFLDLRRKPSKPKVQKPKVESSSNGSEISLLNNSRF
Ga0101390_1004327	Ga0101390_10043271	F021995	MFAVVDFDRQKSFFFTDFQSASDFIAQYSVISNTVVVDLSEQQPAVEKL*
Ga0101390_1004382	Ga0101390_10043821	F026265	YDMAKELKVGKDQAKAALGVGVALRLEVRANVRGRAAGASELPGPHASASACSDDGVREAEKWLQTALDLGRTAARLHLAHLVFDTGPEDTALAHLQDYLSWCVERGRNRCAGCYQTRGEDAQMLTCGGCRVARFCSADHQKMASKSVASGGSLLEGRHKDVCGVLGKWRQQVVKDGMSPDVLRADLLAFLRQ*
Ga0101390_1005214	Ga0101390_10052142	F026012	VRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWIYEVYINKVSSHNKFMNEKSQNLEADEYITIKIAYGFNVSQEKK*
Ga0101390_1007182	Ga0101390_10071821	F015595	VLNKIIPDLQLDLQGAGEAFEDVKQMGLSGEKPLGEVKTKAPNSDYHQIMPPVAARQAEVARDYLKRAARIDELNGHPPGTDGPMVTALKGYNGGQVLVFVMGAFAEMSGDVSRICDIIAHELARTHVSYYNDDAKRTKGMYRQRIQKAWGHTAHRGWARLLLDRARDLIIHGPAHRGAN
Ga0101390_1008942	Ga0101390_10089422	F066764	LDNIRIAYEYEMGEYLEPENRRREKVELRNALVNAARPYGTHRQLAEMVGKTNHTTAIHITREHEVYYNYSPQYRRNYAVALDVVESFARRHQLLPRINGQGRSCSSYENEIETLNKTILSLQKRRDGFIESLDKKRKMAILHTESTI*