3300006496: Human saliva microbial communities from NIH, USA - visit 2, subject 763577454

Overview

Basic Information

• IMG/M Taxon OID: 3300006496
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052537 | Ga0100375
• Sample Name: Human saliva microbial communities from NIH, USA - visit 2, subject 763577454
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 75609468
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctWKa2	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F046433	Metagenome	151	N
F048299	Metagenome / Metatranscriptome	148	Y
F049707	Metagenome	146	N
F077405	Metagenome	117	N
F077781	Metagenome / Metatranscriptome	117	N
F081456	Metagenome	114	N
F081510	Metagenome	114	N
F084362	Metagenome	112	N
F095632	Metagenome	105	N
F101360	Metagenome	102	N
F103433	Metagenome	101	N
F103434	Metagenome	101	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100375_1000001	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	82166
Ga0100375_1000007	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	61368
Ga0100375_1000008	All Organisms → cellular organisms → Bacteria	56410
Ga0100375_1000036	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	21850
Ga0100375_1000037	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	21139
Ga0100375_1000063	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	15710
Ga0100375_1000319	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctWKa2	7939
Ga0100375_1000343	All Organisms → cellular organisms → Bacteria	7680
Ga0100375_1000590	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6046
Ga0100375_1006984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1572
Ga0100375_1024222	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	707
Ga0100375_1031320	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	598
Ga0100375_1032734	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	581
Ga0100375_1036653	Not Available	538

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100375_1000001	Ga0100375_100000162	F103433	MILVMKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRVLFGGITASVFAVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINIWKQAVPVFAATVVAFFGAYWVNFMSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0100375_1000007	Ga0100375_100000726	F046433	MIELPTSPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMKSRCKTTEYEAINDFVQFIEMAKRYLPDYMEDCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERIAGFEVDNDPEIHEASVLVMAASEDYLVDGISAYSQYGGATYPVEAYYILKNSPDAGDMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGEDFDGLSRFRQLLERE*
Ga0100375_1000008	Ga0100375_10000081	F084362	ENTTPPAKPSAPEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK*
Ga0100375_1000036	Ga0100375_100003612	F033081	MYPPDLIMVHRPQKGVMAWLFKKGMPQDPKPVFVWPRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPAGWATGAAWTVGMTGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRAGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0100375_1000037	Ga0100375_100003713	F103434	VVGFRPRRGRYLENGPHVVEVTLAVIKEGRTGRRFERGETFMIDKVLVQPSAGNALKATENRDIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPDALVGKTFQQAGEPLTYDASPMTHHFSVRCDTLGTESR*
Ga0100375_1000063	Ga0100375_10000639	F101360	MAGTELRGRESPVSKENALRRAAIAAHVAKVASQEKKKALKELEEYMAPGDTSKPMIDGMQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRDLISTGDISLLMIEGGDA*
Ga0100375_1000319	Ga0100375_100031913	F081510	MKLPNMNTIKVAAKTTYTTSKILTKKYAPFILLGVGLAGYGYSVYEGIKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPLETKSVEVDGKEIEVESIVPNEGDFYGRWFKYSSNYASDDPEYNEAWVREVDDLMTARISKVGMITFAEVLDALGFEVPKAALPFGWTDGDGFFLEWDTHEVWNDDKQEYEAQLYVRWKTPRNLYATTNFKDLMPKKTRKELN*
Ga0100375_1000343	Ga0100375_100034311	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSVKTPQTN*
Ga0100375_1000590	Ga0100375_10005903	F049707	VSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMRPSLYDSEKKTS*
Ga0100375_1006984	Ga0100375_10069843	F077405	SNSRPRPWQGRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDWLKIIQKQKVRLK
Ga0100375_1024222	Ga0100375_10242222	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLGKITQLEPAKDNPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGASRINVGGYMIDIPKSAMPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFL
Ga0100375_1031320	Ga0100375_10313201	F077781	PPPIAAPARPASAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGVPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARPSPETLEISPLRAAT*
Ga0100375_1032734	Ga0100375_10327342	F081456	PIYYILISLIFLIVFGAISFATWLVWLTNVAFFVKLIITAIGALFAAFTVILYTISAE*
Ga0100375_1036653	Ga0100375_10366532	F048299	QKTWVQSLGQEDPLEKEMATHSSILAWRIPWTEEPGRLQSMGSQRVRQDSATK*