3300006488: Human supragingival plaque microbial communities from NIH, USA - visit number 1 of subject 675950834

Overview

Basic Information

• IMG/M Taxon OID: 3300006488
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052513 | Ga0100250
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit number 1 of subject 675950834
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 82622564
• Sequencing Scaffolds: 22
• Novel Protein Genes: 30
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	8
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F042387	Metagenome	158	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F067847	Metagenome	125	N
F070224	Metagenome	123	N
F071327	Metagenome	122	N
F077405	Metagenome	117	N
F081454	Metagenome	114	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F097490	Metagenome	104	N
F101358	Metagenome	102	Y
F101359	Metagenome	102	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100250_100039	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	80875
Ga0100250_100070	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	52527
Ga0100250_100093	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	42880
Ga0100250_100124	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	34057
Ga0100250_100144	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	30736
Ga0100250_100285	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	19069
Ga0100250_100308	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	17985
Ga0100250_100442	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	14057
Ga0100250_100454	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	13911
Ga0100250_100507	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	13053
Ga0100250_100545	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	12462
Ga0100250_100785	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	9908
Ga0100250_100802	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	9787
Ga0100250_100940	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	8949
Ga0100250_101434	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	6847
Ga0100250_103091	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4070
Ga0100250_105805	Not Available	2491
Ga0100250_106199	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2374
Ga0100250_115283	Not Available	1062
Ga0100250_117480	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	938
Ga0100250_123175	Not Available	717
Ga0100250_125123	Not Available	667

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100250_100039	Ga0100250_10003913	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTSFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMMTYVYKYIKNNKQLSLKIVVIALVAALLFEYAYPWRIIFG*
Ga0100250_100070	Ga0100250_10007026	F059076	MTNRILLLGLLLGGVSINAQNINETNAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNIRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKTGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLDNFLKKLE*
Ga0100250_100093	Ga0100250_10009316	F101360	VSKENALRKAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISGAQEEAIRELISTGDISLIEIEGGDA*
Ga0100250_100093	Ga0100250_10009346	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFVVDKVLVQPSAGNALKATENRVIRGGLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0100250_100124	Ga0100250_10012412	F043991	VSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGSPSNVHPDFRA*
Ga0100250_100124	Ga0100250_10012413	F051214	MPGKIVANDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYVYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0100250_100124	Ga0100250_10012423	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYAMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDNKLKETELNNL*
Ga0100250_100124	Ga0100250_1001248	F036281	MITLIKVDEGPVDIYELRMKYLAKLKETDGVMLPKFIYRNKELFVTEFKPTCDDQWIMYMTNADGLITKMRIKNGDLMSNGSVLFLAKERKTYNAKEYFDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF*
Ga0100250_100124	Ga0100250_1001249	F027205	VASRLIVTADDILKAVKESEEFEKKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0100250_100144	Ga0100250_10014420	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDSIPYDAKFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0100250_100285	Ga0100250_10028516	F101358	LTQPITTDGMPQERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEVLPTQSGNTYDHLGGDSACQLVGSVAAKASDTEVDNNLLVERVLGRVKQ
Ga0100250_100308	Ga0100250_10030812	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYKGQDFMDSYKETVK*
Ga0100250_100308	Ga0100250_10030816	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKYEYLPNSKYLIKYKIDMDGGYKFVGNKEVLDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQNLDMTINLKLKTELLTLENTSKAKSIITQQKIK*
Ga0100250_100442	Ga0100250_10044220	F061927	MKNSIFILSAIFILGACSSDSAQKVTEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0100250_100454	Ga0100250_1004546	F042387	MKRIILFFMAGLFLISCSRENDKMTDETLANSAKIQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFLYEKDFITSKIRYSQAGEELGKTNYQYSNGKLSSVIDEVVISDSGIQYKKVVTREYRYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENITKIHHKISKNVPSGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWASHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQIVTTMVYEYNK*
Ga0100250_100507	Ga0100250_1005071	F101358	LTQPITTDGAPEKRTTHPDTHSIPKRQDVPQYLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSL
Ga0100250_100545	Ga0100250_10054519	F089056	MNVFCRIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGGKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0100250_100545	Ga0100250_1005452	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCVKSNEHLDDDGYIFYKLTDKKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEYDSETKTINGYNNKEQIEIAISE*
Ga0100250_100545	Ga0100250_10054520	F097490	MNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMAKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYSNEMGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0100250_100785	Ga0100250_10078511	F057446	MNSISFGKATITSYPEYFEIADNKKTNKLLYLSASLVFIAIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0100250_100802	Ga0100250_1008025	F054111	MNKPLDNITHEVFLKLMEHLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSL*
Ga0100250_100940	Ga0100250_1009403	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSATALAEDFRKRVLNFDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETGDYYEEYELYSQAKGYRWLDPESDYYEDVLAWEALNKLATEIYFHLEDKLDMKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKVLKEYTPDEYEGISEAMAEMMKYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPVDTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0100250_101434	Ga0100250_1014344	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSAIKGGNAMGAKKANKISFADITDGDKAKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYDSQSAEYSKPQLFLLYQSLKVDC*
Ga0100250_103091	Ga0100250_1030915	F064818	MNKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0100250_105805	Ga0100250_1058051	F070224	MKRLLFLLLTLLHYTAWSQVYNAPDSIYVASGAVYIPPISGEPISLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNAGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH*
Ga0100250_106199	Ga0100250_1061993	F101358	MTEKYSASLPPRQPEHLLTQPITTDGMPQERATHPDTHSIPKRQDVPQYLWNVLRSSGQLDEGWVDVEIITEDGVTLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEILPTQSDNTYDHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR*
Ga0100250_115283	Ga0100250_1152832	F022002	GFTLGVTTPAEARAIIQRQGGKIILEVGIHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLRRIYFNFDGWDVLEQIESELEDKYGAMIESEGMFKKKGIVDAFTTLEVVRTFEYEEHVRIDHAYIAYTDEELERARSAEKESEN*
Ga0100250_117480	Ga0100250_1174802	F054111	MNKSLESITHEEFLKLMERLKNLQEFTFLEYIMXXXXEKTVKIKWDLDYGLFLETESLSTADRDLFLNILDKEILFLI*
Ga0100250_123175	Ga0100250_1231751	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQAYPTAENKKKFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESNKRLLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTESQQELVAETQNHIALLKDLYKKVNKIK*
Ga0100250_125123	Ga0100250_1251232	F077405	WQGRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQK*