3300006457: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765337473

Overview

Basic Information

• IMG/M Taxon OID: 3300006457
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052497 | Ga0100214
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765337473
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 78283055
• Sequencing Scaffolds: 13
• Novel Protein Genes: 20
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F043990	Metagenome	155	N
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F061925	Metagenome	131	N
F071329	Metagenome	122	N
F073671	Metagenome	120	N
F074985	Metagenome	119	N
F077781	Metagenome / Metatranscriptome	117	N
F081456	Metagenome	114	N
F089056	Metagenome	109	N
F095632	Metagenome	105	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100214_100053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	44089
Ga0100214_100054	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43813
Ga0100214_100163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	22185
Ga0100214_100292	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	16345
Ga0100214_100373	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	14927
Ga0100214_100655	All Organisms → cellular organisms → Bacteria	10889
Ga0100214_110079	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1371
Ga0100214_110420	All Organisms → cellular organisms → Bacteria	1331
Ga0100214_112714	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1117
Ga0100214_114401	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1004
Ga0100214_116497	All Organisms → cellular organisms → Bacteria → Proteobacteria	892
Ga0100214_124665	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	636
Ga0100214_131280	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100214_100053	Ga0100214_10005310	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAIYVEFKVSEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQKAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGNFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFLYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYLLDHIKAMHID*
Ga0100214_100053	Ga0100214_10005311	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLISNGSVLFLAEERKTYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFHMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0100214_100053	Ga0100214_10005312	F027205	VASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNADLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK*
Ga0100214_100053	Ga0100214_10005315	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0100214_100053	Ga0100214_10005317	F071329	MLPVAKIIISGLTSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0100214_100053	Ga0100214_10005318	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLHHEEVK*
Ga0100214_100053	Ga0100214_10005329	F081456	MFEEPPIYYILISLIFLIVFGAISMATWMVWLTSIAFFAKLVITAIGFLLAAMTVILYTISAE*
Ga0100214_100054	Ga0100214_10005437	F101360	VSKESALRRAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSSPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEAVQGDPRISVRISTAQEEAIRELISTGDISILEIESGDA*
Ga0100214_100054	Ga0100214_1000546	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFMIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTEAK*
Ga0100214_100163	Ga0100214_10016337	F073671	MTNNKQAEHELAELHEKERSLEKALELVREKIRELINYTNKNKSAR*
Ga0100214_100292	Ga0100214_10029212	F043991	MGKKKPSAVDGFDLNGNIIEEANEFDGVLIEDWVNQRSPLKPSWVGRYSDNMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA*
Ga0100214_100373	Ga0100214_10037310	F049707	VSEYKSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTVWMKPSLYDIERKEN*
Ga0100214_100655	Ga0100214_10065510	F095632	MSFNEKTVYQVVSLTASTCASITAGAVVSALCPPAGAALTVIYSLGSGVLGSYVGEKAGQQYAESLADTIDSMKKSQTN*
Ga0100214_110079	Ga0100214_1100791	F041827	MKHFLSALALGCLLLSCNRDLENNETHETPAPQKEKLVLINNLSGNTSVDFWYKNGNEIESARTDGMGKSNIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIQRIEDLRYIDNIKTRDFHNGSYWEYRYRYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYEISANRSYIKEE
Ga0100214_110420	Ga0100214_1104203	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0100214_112714	Ga0100214_1127142	F040685	MKKLLFKLFFTLAFASISLHGQEKIQQVEVHIFGGMALYSSYYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDRFKKLRNGPSEQAVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0100214_114401	Ga0100214_1144011	F043990	FGVIILGIVVYANHKIERSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEDLPPNGTPEQFLNTTNGYYKYVVDENDDWNFGILIVDTARKEICIYNQILQFPDR*
Ga0100214_116497	Ga0100214_1164973	F061925	MSWEYSINLDSEKAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHITDCDTDEEVTLEHIFRSVI*
Ga0100214_124665	Ga0100214_1246651	F077781	LRPTFCSATGTPPPIAAPARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPGTLEISPLRAAT*
Ga0100214_131280	Ga0100214_1312801	F089056	SKFNPLIIKKMKVFCRIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*