Sample 3300006359

Basic Information
IMG/M Taxon OID	3300006359 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111638 \| Ga0068676
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1400 MetaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1400 MetaT (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	87285631
Sequencing Scaffolds	20
Novel Protein Genes	26
Associated Families	19

Dataset Contents

Total Genome Size

87285631

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Salinibacterium → unclassified Salinibacterium → Salinibacterium sp. PAMC 21357	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Dolichocephalovirinae → Shapirovirus → Caulobacter virus phiCbK	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Salinibacterium → unclassified Salinibacterium → Salinibacterium sp. PAMC 21357

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Dolichocephalovirinae → Shapirovirus → Caulobacter virus phiCbK

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Ecosystem Assignment (GOLD)

Name

Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005028	Metagenome / Metatranscriptome	414	Y
F005302	Metagenome / Metatranscriptome	405	Y
F008499	Metagenome / Metatranscriptome	332	Y
F011940	Metagenome / Metatranscriptome	285	Y
F012577	Metagenome / Metatranscriptome	279	Y
F030445	Metagenome / Metatranscriptome	185	N
F032293	Metagenome / Metatranscriptome	180	Y
F039671	Metagenome / Metatranscriptome	163	Y
F073600	Metagenome / Metatranscriptome	120	N
F073601	Metagenome / Metatranscriptome	120	Y
F085751	Metagenome / Metatranscriptome	111	N
F088951	Metagenome / Metatranscriptome	109	N
F090444	Metagenome / Metatranscriptome	108	N
F092122	Metagenome / Metatranscriptome	107	Y
F093914	Metagenome / Metatranscriptome	106	Y
F097413	Metagenome / Metatranscriptome	104	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0068676_1016272	Not Available	731	Open in IMG/M
Ga0068676_1033485	Not Available	1842	Open in IMG/M
Ga0068676_1033806	Not Available	930	Open in IMG/M
Ga0068676_1034150	Not Available	584	Open in IMG/M
Ga0068676_1034266	Not Available	1198	Open in IMG/M
Ga0068676_1034975	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
Ga0068676_1035458	Not Available	1247	Open in IMG/M
Ga0068676_1043545	Not Available	2000	Open in IMG/M
Ga0068676_1044609	Not Available	539	Open in IMG/M
Ga0068676_1047592	Not Available	555	Open in IMG/M
Ga0068676_1051483	Not Available	551	Open in IMG/M
Ga0068676_1052494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Salinibacterium → unclassified Salinibacterium → Salinibacterium sp. PAMC 21357	661	Open in IMG/M
Ga0068676_1112059	Not Available	779	Open in IMG/M
Ga0068676_1114251	Not Available	1866	Open in IMG/M
Ga0068676_1128492	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Dolichocephalovirinae → Shapirovirus → Caulobacter virus phiCbK	1123	Open in IMG/M
Ga0068676_1129517	Not Available	510	Open in IMG/M
Ga0068676_1141954	Not Available	1401	Open in IMG/M
Ga0068676_1143158	All Organisms → cellular organisms → Bacteria	9332	Open in IMG/M
Ga0068676_1143844	Not Available	510	Open in IMG/M
Ga0068676_1144001	Not Available	2125	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068676_1016272	Ga0068676_10162721	F088951	VEVRRAGLRAGGMRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNRHATRCAESLSAKL*
Ga0068676_1033485	Ga0068676_10334851	F011940	TPPPSSDDVSWDGSLVGDLLDGLEALQRAVSPPAARICDLPAPVLADAPEQHGFQDVFPEFVSGLCVFFTVSAPVLDFVRFPVTLLVISFVFWTAWRVFRSLS*
Ga0068676_1033806	Ga0068676_10338061	F093914	SDYATVTIGKREPVEVTLTFLYGETTNSATNTIYDQFESPTPMLAIRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0068676_1034150	Ga0068676_10341501	F092122	MFNKLLRHLGISPKPEEAQGFDNPDGVEVRVTIEIAKEAMKKLIDSTLAAVSNMREMVLSVGLNPLPEVMQKAYEGLRFVIGWLTTPF
Ga0068676_1034266	Ga0068676_10342662	F005302	MAHSGVVQGLYAGNFAVEISTNGTTWTAVSDAIVKIDDVELSRPSGEAYVGGASDYATVTVGKREPVEITLTFLYSEAPNATAFVIYDQFESVNPALAVRWSPVGIKSNAIAFATSNDGVTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPTDLS*
Ga0068676_1034266	Ga0068676_10342663	F004791	MPEPATIYDVDAVRVDRSVLTIREAATLLNRELAAPVIARLVRKAIGDQADRFPIRALKVVYERVLPQIFEPDAAIRARVEGLVPNVATITLGEYHQFLEASERGIAFPEVTQTLLAKAYGDDILNEPYAAASLLLKKIFDLVGEEGKG*
Ga0068676_1034975	Ga0068676_10349751	F073601	MALPAKRREGQRMFGLLHIAWRCAIKIMACGSIHPRLASREKSVVGMGVLLQQG*
Ga0068676_1035458	Ga0068676_10354581	F073601	AGCPLLGVSLALGRAMLQAKATCLVMVLPAKRREGQRMFWVLHFAWCCAIKIMECGSIIRTLPVEKRALAGMGVLLQQE*
Ga0068676_1043545	Ga0068676_10435454	F073600	NRYIDFDKGEPVRIEGQIDLINLATSKLPNYLPDNPDTLFQSDFAVHLQDDAKMTKLNLKNPTSSQID*
Ga0068676_1044609	Ga0068676_10446091	F073601	LQAKATCLVMVLPAKRREGQQMFWRLHFAWRCAIKIMACGSIIRALPVEKKALAGMGVLLQQG*
Ga0068676_1047592	Ga0068676_10475922	F002970	MSYSTVVDIIEMLAGLNVQYNSATVPALRLTSQASWSDAAQLPMRIVPVLGGLRLVEGGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVVKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0068676_1051483	Ga0068676_10514831	F005302	MAHFGVIQGLYAGNFAVEISTNGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEVTLTFLYDETTNSATNTIYDQFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAP
Ga0068676_1052494	Ga0068676_10524941	F005302	MAHFGVIQGLYAGNFAVEISANGTFWTAVSDATVKIDDVELSRLSGEAYVGGSSDYATVTVGKREPVEITLTFLYNETTNSATNTIYDYFESPTPMLAVRWSPTGVKPNARVYATSNDGTTTGPGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0068676_1112059	Ga0068676_11120591	F039671	MNVPFGIIFVNTPPTVSIPNDNGVVSTITIPSVLLDSSPHIIPP*
Ga0068676_1113345	Ga0068676_11133452	F032293	MRVRKIGTLVFDSNTNIIVDADAQDAPGVGFHINRLDDPQPFAVEIAFKRATRQQALEAVNALARELFSYAQRRQNNHLAIAGGAPVFIEDA
Ga0068676_1114251	Ga0068676_11142513	F090444	MHIVELPRRVPSLSNSIESTSLNGIKSTSLNSIKSTIEPVRGNENNDFIAAFEGIMNKFPGNKHTVFLISDGAFNDPDNTRDRSLEVHPWLEEHHQFLENLYMLLWNCPPNNYSGYQSDKDMWARYLIDHRMMQKGRLLEIEPDDVRGLGKFLQNMIESTNLGNALPKGKYNGWLQGDINIPDIPGYTSTITLSVWVLPTSTAEDVQASLHIGSEQYELTLSNSTLLGRKYDVPPPYPNSCISSLRLSFDSEIYSGYYVLEPHFIHEDLKLQQVIINTGDNLDYADIYANTGVYTIWNSPKVLMELKGLYDTYGGGNVSILKSYRDCYSFSVAASFNA
Ga0068676_1128492	Ga0068676_11284921	F097413	FFGASRHGSHLTGYFPIFDVENIKIEFGEIPRGRNRIDYAGPRVAAGENGVGIISVDSFTRNEWSIHTRFWDGESETYKDREYQIFTDDYFLSVARVAYYKGNWIAIAPIEREYKVANLGPDLKKRGNINQIEWKTFESDEVTYAGHAELITNRDFTELYAIFGARGDNSQIITIMKYKEDTNNEATGTFEKIAEINTSDTNGGVCYRPSGALDSQGNLHFTCDDTGGSLYYYTNAEGSWKKQLLTNNGLNGVLRIDEKDGIHVGFITFRPRSPAYMYSSDGNTWTRPIVANEIVNPKYGFTANMVGGVAIHGQNPYLLVAFEDWTNGGPRVGLIMFGAET*
Ga0068676_1129517	Ga0068676_11295172	F030445	MLVAVTKPHQQFPVSLFSAEYELTTSIDGDERGRITLPPALARSGVMTQIGDELIIYCTQLSKTIWRGQIERIEEARDGNITWYALGFGALQREARISVVQQMSDMTRWKPVGAGMMAGS
Ga0068676_1130035	Ga0068676_11300352	F032293	MRVRQIGTLVFDENTNIVVDANTQDAAGIGFNINKLFDPVPFSVEIAFKRATRQQALNAINALARELYTYAQRRQNNYLAVAGGVQVIIED
Ga0068676_1141954	Ga0068676_11419542	F012577	VYCTQLSRTIWRGQIERIEETQDGSITWHALGFGALQRDARISVVQNMSDMSRWRPVGSGFIPPSAGYDSRPDLWEYEIVSVGGLAQMRIRTKKAGTITTYDLLFLAYLYDQPERYFRIRAYENIRVTSIAYTNLAVGVLIAPITAVPQPDAYTFTLGAFTLQPAPGTVIETNCYGWIVGVLAPGNETTAGATSVTFHVTVNNTSAYSGHAIDEGLLTSALIGRGGCCDIYIPAGTNANITKPDANLREIIEQSTDEYAQVRYPRKRFLRDRALPTIDFRADSPLVWRFPETTRVVDISKAPNRVYGQYRGYWTDHLTATTMILPLESRRQSLAWRVASVGEYGSKAIAETRRDEAAVAFDRQIAPITVELDNARYELMTRDGITVPNWAADVSDYAIVPGYFRNAKITSRTISRERTTYTVSFDPDDFVNALR*
Ga0068676_1143158	Ga0068676_114315810	F002970	MSYSAVTDIIEMLAGLTVQYNSVVVPVQRLAAQANWSDAAQLPVRIIPTIGGLRLIEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTASALVNYIEDYVARLRSAWLARGDVQLLNVSGIIDVVRYGERAYEGATVTTRFAHLIRAPST*
Ga0068676_1143158	Ga0068676_114315812	F004791	MSEPATIYDVDAIRVDRTALTIREAATLLNRELTPEVIARLVRKAIGNQADQFPIRALKAVYERALPKIFEPDEAIRSRVAGLMPNVTTITLGEYHQFLEASERKIAFPDVAATLLAKAYGDDILNEPYAAAALLLKRIFDAVGDEGNG*
Ga0068676_1143844	Ga0068676_11438441	F004307	VKVGGETERAELNGAYIGRFLGVKEREWPTFRTRNDPEPEYEPVFVFEFEVDDPDFDAPIRVAKWVRKPPRLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVMSAVGREYQLTIETKPSGWYEIIHIAPVRKMRRREATNGNEEIPF*
Ga0068676_1144001	Ga0068676_11440011	F085751	MSDAIAWIIAFGVIFALVNSNAADGILSALDLSDNLKRAVDWARGVRGVPAGVSAACFFILAYVFGALAYRYDLVPTWRFIQPVANDVLATGAEWL
Ga0068676_1144001	Ga0068676_11440013	F005028	MRDDDLRAAMQFFAGRLRGAELDPTRLLRWTRHKLRNDAQSVAELMLTVGYRATYIRYFLRYHIRNVDPETDSEDVVLVVADLQSAAKKLRQPYRDLAAVCLRWGYVHETVVQMLEKALERKR*
Ga0068676_1144001	Ga0068676_11440015	F008499	MKSRSKSEPRWKRKERDAVRALQAIFGRVSDPSLARLLTSTGRAGHLTRFGVDGFVGNNPGFVVEVKARKRMLTKPAIDALLQTVDRAARFERIPLFVVVFGDDVPARTENGARVDREWVMMPRRVLDELVGKEKKNE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006359: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1400 MetaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences