Metagenome / Metatranscriptome Family F088951

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088951
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	47 residues
Representative Sequence	MRSLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRCA
Number of Associated Samples	65
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.85 %
% of genes near scaffold ends (potentially truncated)	82.57 %
% of genes from short scaffolds (< 2000 bps)	90.83 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.394 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat (48.624 % of family members)
Environment Ontology (ENVO)	Unclassified (97.248 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (55.963 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.87% β-sheet: 0.00% Coil/Unstructured: 89.13%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13340	DUF4096	5.77
PF03441	FAD_binding_7	2.88
PF02698	DUF218	1.92
PF13360	PQQ_2	1.92
PF00300	His_Phos_1	0.96
PF00490	ALAD	0.96
PF00565	SNase	0.96
PF02896	PEP-utilizers_C	0.96
PF02355	SecD_SecF	0.96
PF01740	STAS	0.96
PF13424	TPR_12	0.96
PF03683	UPF0175	0.96
PF13426	PAS_9	0.96
PF00025	Arf	0.96
PF09860	DUF2087	0.96
PF00756	Esterase	0.96
PF00118	Cpn60_TCP1	0.96
PF10049	DUF2283	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0415	Deoxyribodipyrimidine photolyase	Replication, recombination and repair [L]	2.88
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	1.92
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	1.92
COG0113	Delta-aminolevulinic acid dehydratase, porphobilinogen synthase	Coenzyme transport and metabolism [H]	0.96
COG0341	Preprotein translocase subunit SecF	Intracellular trafficking, secretion, and vesicular transport [U]	0.96
COG0342	Preprotein translocase subunit SecD	Intracellular trafficking, secretion, and vesicular transport [U]	0.96
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG1100	GTPase SAR1 family domain	General function prediction only [R]	0.96
COG2886	Predicted antitoxin, contains HTH domain	General function prediction only [R]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	65.14 %
Unclassified	root	N/A	26.61 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.92 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	63.30 %
Unclassified	root	N/A	26.61 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.92 %

Name	Rank	Taxonomy	Distribution
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	53.21 %
Unclassified	root	N/A	26.61 %
Candidatus Thermofonsia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia	1.83 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.92 %
Candidatus Velamenicoccus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Chloroflexales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales	53.21 %
Unclassified	root	N/A	26.61 %
Candidatus Thermofonsia Clade 3	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3	1.83 %
Candidatus Velamenicoccus archaeovorus	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	0.92 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Roseiflexineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae	48.62 %
Unclassified	root	N/A	26.61 %
Candidatus Thermofonsia Clade 3 bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	1.83 %
Candidatus Velamenicoccus archaeovorus	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	0.92 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Roseiflexaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae	48.62 %
Unclassified	root	N/A	26.61 %
Candidatus Thermofonsia Clade 3 bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	1.83 %
Candidatus Velamenicoccus archaeovorus	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	0.92 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Roseiflexus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus	48.62 %
Unclassified	root	N/A	26.61 %
Candidatus Thermofonsia Clade 3 bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	1.83 %
Candidatus Velamenicoccus archaeovorus	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	0.92 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Roseiflexus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus	46.79 %
Unclassified	root	N/A	26.61 %
Candidatus Thermofonsia Clade 3 bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	1.83 %
Candidatus Velamenicoccus archaeovorus	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	0.92 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Roseiflexus sp. RS-1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	46.79 %
Unclassified	root	N/A	26.61 %
Candidatus Thermofonsia Clade 3 bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	1.83 %
Candidatus Velamenicoccus archaeovorus	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	0.92 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002493\|JGI24185J35167_1011152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	2953	Open in IMG/M
3300002493\|JGI24185J35167_1012870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	2638	Open in IMG/M
3300002510\|JGI24186J35511_1009794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	2137	Open in IMG/M
3300002510\|JGI24186J35511_1009794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	2137	Open in IMG/M
3300002510\|JGI24186J35511_1036313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	742	Open in IMG/M
3300002510\|JGI24186J35511_1039961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	682	Open in IMG/M
3300003688\|Ga0061020_1038977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales	1233	Open in IMG/M
3300003688\|Ga0061020_1092052	Not Available	623	Open in IMG/M
3300005244\|Ga0068644_1018552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	659	Open in IMG/M
3300005245\|Ga0068640_121999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	527	Open in IMG/M
3300005245\|Ga0068640_130195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	567	Open in IMG/M
3300005246\|Ga0068638_124925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	762	Open in IMG/M
3300005247\|Ga0068637_1030902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	2372	Open in IMG/M
3300005248\|Ga0068636_1032659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	640	Open in IMG/M
3300005248\|Ga0068636_1032659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	640	Open in IMG/M
3300005248\|Ga0068636_1080680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	580	Open in IMG/M
3300005249\|Ga0068645_1116458	Not Available	720	Open in IMG/M
3300005250\|Ga0068635_1050070	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1657	Open in IMG/M
3300005250\|Ga0068635_1109896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	813	Open in IMG/M
3300005250\|Ga0068635_1109896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	813	Open in IMG/M
3300005251\|Ga0068634_1128371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	930	Open in IMG/M
3300005388\|Ga0068652_103754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	643	Open in IMG/M
3300005390\|Ga0068657_107032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	1185	Open in IMG/M
3300005390\|Ga0068657_119951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	1432	Open in IMG/M
3300005409\|Ga0068651_1009529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales	2323	Open in IMG/M
3300005411\|Ga0068647_1040775	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	508	Open in IMG/M
3300005452\|Ga0068706_1061603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	670	Open in IMG/M
3300005453\|Ga0068705_10139639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	609	Open in IMG/M
3300005480\|Ga0068661_110977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	666	Open in IMG/M
3300005480\|Ga0068661_110977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	666	Open in IMG/M
3300005486\|Ga0068660_103141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	585	Open in IMG/M
3300005486\|Ga0068660_115136	Not Available	531	Open in IMG/M
3300005486\|Ga0068660_117584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	893	Open in IMG/M
3300005486\|Ga0068660_121804	Not Available	538	Open in IMG/M
3300005490\|Ga0068662_129263	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300005492\|Ga0068665_111517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	528	Open in IMG/M
3300005492\|Ga0068665_115281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	542	Open in IMG/M
3300005494\|Ga0068668_1027824	Not Available	594	Open in IMG/M
3300005494\|Ga0068668_1038336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	521	Open in IMG/M
3300005495\|Ga0068666_1014888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	650	Open in IMG/M
3300005638\|Ga0068669_1151081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	578	Open in IMG/M
3300006359\|Ga0068676_1016272	Not Available	731	Open in IMG/M
3300006380\|Ga0068664_1035492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	953	Open in IMG/M
3300006380\|Ga0068664_1164538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	658	Open in IMG/M
3300006380\|Ga0068664_1164538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	658	Open in IMG/M
3300006848\|Ga0101768_1220697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	562	Open in IMG/M
3300007000\|Ga0102499_1090240	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300010176\|Ga0124933_175194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	701	Open in IMG/M
3300010183\|Ga0124919_1091728	Not Available	576	Open in IMG/M
3300010184\|Ga0124920_1124679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	577	Open in IMG/M
3300010191\|Ga0124914_1077357	Not Available	504	Open in IMG/M
3300010195\|Ga0124911_1158521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	569	Open in IMG/M
3300010196\|Ga0124923_1071843	Not Available	714	Open in IMG/M
3300020153\|Ga0197142_1004282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	11603	Open in IMG/M
3300026293\|Ga0209227_1082959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	974	Open in IMG/M
3300026509\|Ga0209809_1140673	Not Available	553	Open in IMG/M
3300026509\|Ga0209809_1156420	Not Available	504	Open in IMG/M
3300027279\|Ga0209691_1028143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1251	Open in IMG/M
3300027279\|Ga0209691_1055230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	748	Open in IMG/M
3300027515\|Ga0209162_1146533	Not Available	579	Open in IMG/M
3300031245\|Ga0308395_1078950	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300031245\|Ga0308395_1147215	Not Available	506	Open in IMG/M
3300031508\|Ga0308394_1053724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	930	Open in IMG/M
3300031509\|Ga0308399_1007447	Not Available	3176	Open in IMG/M
3300031512\|Ga0308397_1107766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	591	Open in IMG/M
3300031512\|Ga0308397_1128399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	524	Open in IMG/M
3300031513\|Ga0308412_1074793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus	1075	Open in IMG/M
3300031513\|Ga0308412_1104572	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300031513\|Ga0308412_1106619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	832	Open in IMG/M
3300031513\|Ga0308412_1171435	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300031515\|Ga0308396_1061519	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300031517\|Ga0308392_1093184	Not Available	625	Open in IMG/M
3300031567\|Ga0308391_1096459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	618	Open in IMG/M
3300031568\|Ga0308393_1021714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1726	Open in IMG/M
3300031568\|Ga0308393_1090137	Not Available	661	Open in IMG/M
3300031767\|Ga0308401_1084065	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300031776\|Ga0308415_1083714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	671	Open in IMG/M
3300031783\|Ga0308418_1121900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	556	Open in IMG/M
3300031783\|Ga0308418_1128429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales	537	Open in IMG/M
3300031812\|Ga0308411_10217514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	638	Open in IMG/M
3300031812\|Ga0308411_10278038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	542	Open in IMG/M
3300031812\|Ga0308411_10304900	Not Available	510	Open in IMG/M
3300031865\|Ga0308408_1047112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus	1065	Open in IMG/M
3300031865\|Ga0308408_1057288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	935	Open in IMG/M
3300031865\|Ga0308408_1079177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	752	Open in IMG/M
3300031865\|Ga0308408_1146015	Not Available	501	Open in IMG/M
3300031875\|Ga0308405_1160153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales	510	Open in IMG/M
3300031878\|Ga0308404_1047831	Not Available	873	Open in IMG/M
3300031878\|Ga0308404_1085453	Not Available	618	Open in IMG/M
3300031948\|Ga0308406_1081374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	677	Open in IMG/M
3300031950\|Ga0308417_1073338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1302	Open in IMG/M
3300031950\|Ga0308417_1176400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	682	Open in IMG/M
3300031950\|Ga0308417_1189214	Not Available	649	Open in IMG/M
3300031950\|Ga0308417_1233662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	560	Open in IMG/M
3300031950\|Ga0308417_1261976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	517	Open in IMG/M
3300031966\|Ga0308420_1061295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	1324	Open in IMG/M
3300032034\|Ga0308407_1067547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	773	Open in IMG/M
3300032049\|Ga0308416_1072319	Not Available	655	Open in IMG/M
3300032058\|Ga0308419_1194334	Not Available	500	Open in IMG/M
3300032356\|Ga0308414_1088702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	1126	Open in IMG/M
3300032356\|Ga0308414_1121538	Not Available	874	Open in IMG/M
3300032356\|Ga0308414_1172155	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300033886\|Ga0308413_015144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	2849	Open in IMG/M
3300033886\|Ga0308413_072371	Not Available	914	Open in IMG/M
3300033886\|Ga0308413_150945	Not Available	544	Open in IMG/M
3300033886\|Ga0308413_154336	Not Available	536	Open in IMG/M
3300034647\|Ga0372968_032156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales	686	Open in IMG/M
3300034648\|Ga0372970_047599	Not Available	607	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Thermal Springs	Environmental → Aquatic → Thermal Springs	100.00%

Habitat	Taxonomy	Distribution
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	99.08%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.92%

Habitat	Taxonomy	Distribution
Anoxygenic And Chlorotrophic Microbial Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat	48.62%
Hot Spring Phototrophic Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat	44.04%
Anoxygenic And Chlorotrophic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic	6.42%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002493	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012	Environmental	Open in IMG/M
3300002510	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012	Environmental	Open in IMG/M
3300003688	Coassembly of YNP Bryant MS undermat 2012 and YNP Bryant MS upper layer 2012	Environmental	Open in IMG/M
3300005244	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1000_T MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005245	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0600_T MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005246	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2300_T MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005247	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2000_T MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005248	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_T MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005249	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_T MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005250	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_T MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005251	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_T MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005388	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005390	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2300_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005409	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005411	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1400(2)_T MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005452	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG	Environmental	Open in IMG/M
3300005453	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG	Environmental	Open in IMG/M
3300005480	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0800_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005486	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0700_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005490	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0900_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005492	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300(2)_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005494	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1600(2)_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005495	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1400(2)_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005638	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700(2)_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006359	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1400 MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006380	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006848	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500(2)_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007000	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700(2)_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010176	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0300_B MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010183	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0700_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010184	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0800_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010191	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010195	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010196	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300020153	Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 60_MetaG	Environmental	Open in IMG/M
3300026293	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant NP 2012 (SPAdes)	Environmental	Open in IMG/M
3300026509	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)	Environmental	Open in IMG/M
3300027279	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)	Environmental	Open in IMG/M
3300027515	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP MetaG (SPAdes)	Environmental	Open in IMG/M
3300031245	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4	Environmental	Open in IMG/M
3300031508	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2	Environmental	Open in IMG/M
3300031509	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60	Environmental	Open in IMG/M
3300031512	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8	Environmental	Open in IMG/M
3300031513	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer	Environmental	Open in IMG/M
3300031515	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_Pe2	Environmental	Open in IMG/M
3300031517	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2	Environmental	Open in IMG/M
3300031567	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050623_t1	Environmental	Open in IMG/M
3300031568	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2	Environmental	Open in IMG/M
3300031767	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1	Environmental	Open in IMG/M
3300031776	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55	Environmental	Open in IMG/M
3300031783	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd	Environmental	Open in IMG/M
3300031812	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer	Environmental	Open in IMG/M
3300031865	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe3	Environmental	Open in IMG/M
3300031875	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MS13	Environmental	Open in IMG/M
3300031878	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4	Environmental	Open in IMG/M
3300031948	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe1	Environmental	Open in IMG/M
3300031950	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65	Environmental	Open in IMG/M
3300031966	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55	Environmental	Open in IMG/M
3300032034	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe2	Environmental	Open in IMG/M
3300032049	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60	Environmental	Open in IMG/M
3300032058	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS50	Environmental	Open in IMG/M
3300032356	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50	Environmental	Open in IMG/M
3300033886	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd	Environmental	Open in IMG/M
3300034647	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_0600_MSt7 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034648	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1000_MSt9 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24185J35167_10111521	3300002493	Anoxygenic And Chlorotrophic Microbial Mat	SRDFSRQAASGNTLSHKVRRSDTRNSHATRCAKSLSEKL*
JGI24185J35167_10128701	3300002493	Anoxygenic And Chlorotrophic Microbial Mat	LTPAQAGFPPASRDFSRQAASGTTLSHQVRRSDARNRHATRCAQSLSEKL*
JGI24186J35511_10097942	3300002510	Anoxygenic And Chlorotrophic Microbial Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNSHATQCAESLSEKL*
JGI24186J35511_10097943	3300002510	Anoxygenic And Chlorotrophic Microbial Mat	MRSXXPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRCAESLSEKL*
JGI24186J35511_10363131	3300002510	Anoxygenic And Chlorotrophic Microbial Mat	MRPLKPAQAGFPPASRDFRRQAASGNILAHKVRRSATRNRHATWCAQRLSEPLEPFRLWRDR
JGI24186J35511_10399611	3300002510	Anoxygenic And Chlorotrophic Microbial Mat	MRSLXPAQAGFPPASRDFSRQAASGNTPSHKVRRSGTRNSHATRCAKSLSEKL*
Ga0061020_10389774	3300003688	Anoxygenic And Chlorotrophic Microbial Mat	MRSLTPAQAGFPPASRDFSRQAASGTTLSHXVRRSDARNRHATRCAQSLSEKL*
Ga0061020_10920521	3300003688	Anoxygenic And Chlorotrophic Microbial Mat	RRAGLQASGMRSLTPAQAGFPPASRDFSRQAASGNTLSHQVRRADPRNRHATRCAESLSEKL*
Ga0068644_10185522	3300005244	Anoxygenic And Chlorotrophic Microbial Mat	MRSLTPVQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRHATRCAQRLSEPL
Ga0068640_1219991	3300005245	Anoxygenic And Chlorotrophic Microbial Mat	AQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRCAESLSAKL*
Ga0068640_1301951	3300005245	Anoxygenic And Chlorotrophic Microbial Mat	MRSLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRCA
Ga0068638_1249251	3300005246	Anoxygenic And Chlorotrophic Microbial Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHAT
Ga0068637_10309022	3300005247	Anoxygenic And Chlorotrophic Microbial Mat	MRPLTPAQAGFPPASRDFSRQAASGNPLSHKVRRSDTRNSHATQCAESLSEKL*
Ga0068636_10326591	3300005248	Anoxygenic And Chlorotrophic Microbial Mat	LRASGMRSLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSNTRNRHATRCAQSLSAKL*
Ga0068636_10326592	3300005248	Anoxygenic And Chlorotrophic Microbial Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNRHATRCAQSLSEKL*
Ga0068636_10806802	3300005248	Anoxygenic And Chlorotrophic Microbial Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNR
Ga0068645_11164583	3300005249	Anoxygenic And Chlorotrophic Microbial Mat	AQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRCAQSLSEKL*
Ga0068635_10500702	3300005250	Anoxygenic And Chlorotrophic Microbial Mat	MRSLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRC
Ga0068635_11098961	3300005250	Anoxygenic And Chlorotrophic Microbial Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNSHATRC
Ga0068635_11098962	3300005250	Anoxygenic And Chlorotrophic Microbial Mat	MRSLTPAQAGFPPARRDFSRQAASGNTLSHKVRRSDARNSHATRCAESLSEKL*
Ga0068634_10490081	3300005251	Anoxygenic And Chlorotrophic Microbial Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHQVVVPPRETV
Ga0068634_11283711	3300005251	Anoxygenic And Chlorotrophic Microbial Mat	MRSLTPAQAGFPPARRDFSRQAASGNTLSHKVRRSDARNSHATRCAESLSEK
Ga0068652_1037542	3300005388	Anoxygenic And Chlorotrophic Microbial Mat	MRSLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATQCAESLSEKL*
Ga0068657_1070321	3300005390	Anoxygenic And Chlorotrophic Microbial Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRHAT
Ga0068657_1199512	3300005390	Anoxygenic And Chlorotrophic Microbial Mat	VEVRRAGLRAGGMRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNRHATRCAESLSEKR*
Ga0068651_10095295	3300005409	Anoxygenic And Chlorotrophic Microbial Mat	MRSLTPAQAGFPSASRDFSRQAASGTTLSHQVRRSATRNRHATRCAQRLSE
Ga0068647_10407752	3300005411	Anoxygenic And Chlorotrophic Microbial Mat	MRSFKPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNSHATRCAKSLSEKL*
Ga0068706_10616031	3300005452	Anoxygenic And Chlorotrophic	VRRAGLRASGMRSLTPAQAGFPPASRDFSRQAASGNTLSHQVRRSDTRNRHATRCAQSLSEKL*
Ga0068705_101396391	3300005453	Anoxygenic And Chlorotrophic	PPASRDFSRQAASGNTLSHQVRRSDTRNRHATRCAQSLSEKL*
Ga0068661_1109771	3300005480	Anoxygenic And Chlorotrophic Microbial Mat	MRSLTPAQAGFPPARRDFSRQAASGNTLSHKVRRSDARNSHATR
Ga0068661_1109773	3300005480	Anoxygenic And Chlorotrophic Microbial Mat	RASGMRSFKPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNSHATRCAESLSEKL*
Ga0068660_1031411	3300005486	Anoxygenic And Chlorotrophic Microbial Mat	MRPRKPAQAGFLPASRDFSRQAASGTTLSHQVRRSATRNRHATRCAQRLSEPLE
Ga0068660_1151362	3300005486	Anoxygenic And Chlorotrophic Microbial Mat	MRSLKPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRYAQSLSEKL*
Ga0068660_1175841	3300005486	Anoxygenic And Chlorotrophic Microbial Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHQVRRS
Ga0068660_1218041	3300005486	Anoxygenic And Chlorotrophic Microbial Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATR
Ga0068662_1292631	3300005490	Anoxygenic And Chlorotrophic Microbial Mat	MRSRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRHAT
Ga0068665_1115171	3300005492	Anoxygenic And Chlorotrophic Microbial Mat	MRSFKPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRCAESLSAKL*
Ga0068665_1152813	3300005492	Anoxygenic And Chlorotrophic Microbial Mat	MRSRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRN
Ga0068668_10278241	3300005494	Anoxygenic And Chlorotrophic Microbial Mat	MRSLKPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSH
Ga0068668_10383362	3300005494	Anoxygenic And Chlorotrophic Microbial Mat	GMRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNRHATRCAESLSAKL*
Ga0068666_10148882	3300005495	Anoxygenic And Chlorotrophic Microbial Mat	VEVRRAGLRASGMRSLTPAQAGFPPASRDFSRQAASGTTLSHKVRRSDTRNSHATRCAESLSAKL*
Ga0068669_11510813	3300005638	Anoxygenic And Chlorotrophic Microbial Mat	MRSRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSAT
Ga0068676_10162721	3300006359	Anoxygenic And Chlorotrophic Microbial Mat	VEVRRAGLRAGGMRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNRHATRCAESLSAKL*
Ga0068664_10354923	3300006380	Anoxygenic And Chlorotrophic Microbial Mat	QAGFPPASRDFSRQAASGNTLSHKVRRSDTRNRHATRCAESLSEKL*
Ga0068664_11645381	3300006380	Anoxygenic And Chlorotrophic Microbial Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRCAES
Ga0068664_11645383	3300006380	Anoxygenic And Chlorotrophic Microbial Mat	LTPAQAGFPPASRDFSRQAASGNPLSHKVRRSDTRNSHATQCAESLSEKL*
Ga0101768_12206972	3300006848	Anoxygenic And Chlorotrophic Microbial Mat	ASGMRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNRHATRCAESLSEKR*
Ga0102499_10902401	3300007000	Anoxygenic And Chlorotrophic Microbial Mat	KPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRYAQSLSEKL*
Ga0124933_1751942	3300010176	Anoxygenic And Chlorotrophic Microbial Mat	MRSFKPAQAGFPPASRDFSRQAASGNTLSHKVRRSD
Ga0124919_10917281	3300010183	Anoxygenic And Chlorotrophic Microbial Mat	MRSLKPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATR
Ga0124920_11246792	3300010184	Anoxygenic And Chlorotrophic Microbial Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRH
Ga0124914_10773571	3300010191	Anoxygenic And Chlorotrophic Microbial Mat	PAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRCAESLSAKL*
Ga0124911_11585212	3300010195	Anoxygenic And Chlorotrophic Microbial Mat	MRSRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRHATRCAQRLSEPLEPF
Ga0124923_10718431	3300010196	Anoxygenic And Chlorotrophic Microbial Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHKVRRSATRNRHATR
Ga0197142_10042821	3300020153	Sediment	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRHSDTRNSHATR
Ga0209227_10829592	3300026293	Anoxygenic And Chlorotrophic Microbial Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHQVRRSDTRNSHATRCAESLS
Ga0209809_11406731	3300026509	Anoxygenic And Chlorotrophic	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNSHATR
Ga0209809_11564202	3300026509	Anoxygenic And Chlorotrophic	MRSLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNSHATR
Ga0209691_10281431	3300027279	Anoxygenic And Chlorotrophic	MRSLTPAQAGFPPASRDFSRQAASGTTLSHKVRRSATRNRHATWCA
Ga0209691_10552302	3300027279	Anoxygenic And Chlorotrophic	MRPRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRHATR
Ga0209162_11465331	3300027515	Anoxygenic And Chlorotrophic	MRSLTPAQAGFPPASRDFSRQAASGNTLSHQVRRSDTRNSHATRCAESLS
Ga0308395_10789501	3300031245	Hot Spring Phototrophic Mat	TPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNRHATRCAESLSAKL
Ga0308395_11472151	3300031245	Hot Spring Phototrophic Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNRHATRCA
Ga0308394_10537242	3300031508	Hot Spring Phototrophic Mat	MRSRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRHATR
Ga0308399_10074471	3300031509	Hot Spring Phototrophic Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSA
Ga0308397_11077661	3300031512	Hot Spring Phototrophic Mat	MRSLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATR
Ga0308397_11283991	3300031512	Hot Spring Phototrophic Mat	TPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRCAQSLSAKL
Ga0308412_10747931	3300031513	Hot Spring Phototrophic Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDAR
Ga0308412_11045722	3300031513	Hot Spring Phototrophic Mat	MRSLKPAQAGFLPASRDFSRQAASETTLSHQVRRSATRNRHATRCAQRLSKKL
Ga0308412_11066191	3300031513	Hot Spring Phototrophic Mat	MRSLTPAQAGFPPASRDFSRQAASGNPLSHKVRRSATRNRHATRCAK
Ga0308412_11714351	3300031513	Hot Spring Phototrophic Mat	RASGMRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNRHATRCAQSLSEKL
Ga0308396_10615191	3300031515	Hot Spring Phototrophic Mat	RASGMRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNRHATRCAQSLSEKL
Ga0308392_10931841	3300031517	Hot Spring Phototrophic Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRHATRCAQSLSE
Ga0308391_10964591	3300031567	Hot Spring Phototrophic Mat	MRSFKPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRCAE
Ga0308393_10217141	3300031568	Hot Spring Phototrophic Mat	GMRSLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNSHATRCAESLSEKL
Ga0308393_10901371	3300031568	Hot Spring Phototrophic Mat	GMRSLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNSHSTWCAESLSEKL
Ga0308401_10840651	3300031767	Hot Spring Phototrophic Mat	MRSLTPAQAGFPPASRDFSRQAASGNTLSHQVRRSDTRNRHATRCAQSLS
Ga0308415_10837141	3300031776	Hot Spring Phototrophic Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARN
Ga0308418_11219001	3300031783	Hot Spring Phototrophic Mat	MRSLTPAQAGFPPASRDFSLQAASGTTLSHQVRRSATRNRH
Ga0308418_11284291	3300031783	Hot Spring Phototrophic Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATR
Ga0308411_102175141	3300031812	Hot Spring Phototrophic Mat	MRSLTPAQAGFPPASRDFSRQAASGNPLSHKVRRSATRNRHATRCAKSLSEKLE
Ga0308411_102780383	3300031812	Hot Spring Phototrophic Mat	MRPRKPAQAGFLPASRDFSRQAASGTTLSHQVRRSATRNRHATRCAQR
Ga0308411_103049003	3300031812	Hot Spring Phototrophic Mat	MRPLKPAQAGFPPASRDFSRQAASGNPLSHQVRRS
Ga0308408_10471121	3300031865	Hot Spring Phototrophic Mat	MRSRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRHATRCAQ
Ga0308408_10572881	3300031865	Hot Spring Phototrophic Mat	MRSLTPAQAGFPPARRDFSRQAASGNTLSHKVRRS
Ga0308408_10791771	3300031865	Hot Spring Phototrophic Mat	MRSRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATR
Ga0308408_11460151	3300031865	Hot Spring Phototrophic Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNS
Ga0308405_11601531	3300031875	Hot Spring Phototrophic Mat	MRSLTPAQAGFPPASRDFSRQAASGNTLSHKVRRS
Ga0308404_10478311	3300031878	Hot Spring Phototrophic Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHKIRRSAT
Ga0308404_10854531	3300031878	Hot Spring Phototrophic Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRN
Ga0308406_10813741	3300031948	Hot Spring Phototrophic Mat	MRSRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRHATRCAQR
Ga0308417_10733381	3300031950	Hot Spring Phototrophic Mat	MRPLKPAQAGFPPASRDFSRQAASGNTLAHKVRRSDTRNSHATRCAKSLSETL
Ga0308417_11764003	3300031950	Hot Spring Phototrophic Mat	MRSLTPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRN
Ga0308417_11892141	3300031950	Hot Spring Phototrophic Mat	MRSLTPAQAGFPPASRDFSRQAASGTTLSHQVRRSA
Ga0308417_12336621	3300031950	Hot Spring Phototrophic Mat	ASGMRSLKPAQAGFPPASRDFSRQAASGTTLSHKVRRSATRNRHATRCAQSLFEQL
Ga0308417_12619761	3300031950	Hot Spring Phototrophic Mat	MRSRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRHATRCAQRLSEPLE
Ga0308420_10612951	3300031966	Hot Spring Phototrophic Mat	MRSLTPAQAGFPPASRDFSRQAASGNTLSHQVRRSDTR
Ga0308407_10675472	3300032034	Hot Spring Phototrophic Mat	MRSRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRHATRCAQRLSEPLEPFRLR
Ga0308416_10723191	3300032049	Hot Spring Phototrophic Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHKVRRSATRNRHATRCAQRLSEPLE
Ga0308419_11943341	3300032058	Hot Spring Phototrophic Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHQVRRSDARNR
Ga0308414_10887021	3300032356	Hot Spring Phototrophic Mat	MRPLTPAQAGFPPASRDFSRQAASGTTLSHQVRRSATRNRHATR
Ga0308414_11215382	3300032356	Hot Spring Phototrophic Mat	MRSRKPAQAGFPPASRDFSRQAASGTTLSHQVRRSA
Ga0308414_11721551	3300032356	Hot Spring Phototrophic Mat	AGFPPASRDFSRQAASGNTLSHKVRRSDTRNRHATRCAQSLSEKL
Ga0308413_015144_1857_2018	3300033886	Hot Spring Phototrophic Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNRHATRCAQSLSEKL
Ga0308413_072371_249_410	3300033886	Hot Spring Phototrophic Mat	MRSLKPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATRYAQSLSEKL
Ga0308413_150945_3_119	3300033886	Hot Spring Phototrophic Mat	MRPRKPAQAGFPPASRDFSRQAASGTTLSHKVRRSDTRN
Ga0308413_154336_2_157	3300033886	Hot Spring Phototrophic Mat	MRPLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDARNSHATRCAESLSEK
Ga0372968_032156_571_684	3300034647	Hot Spring Phototrophic Mat	MRSRKPAQAGFPPASRDFRRQAASGTTLSHKVRRSATR
Ga0372970_047599_125_286	3300034648	Hot Spring Phototrophic Mat	MRSLTPAQAGFLPASRDFSRQAASGNTLSYKVRRSNTRNRHATRCAQSLSAKL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088951

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences