3300006348: Human supragingival plaque microbial communities from NIH, USA - visit 2 of subject 158802708

Overview

Basic Information

• IMG/M Taxon OID: 3300006348
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052480 | Ga0099694
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2 of subject 158802708
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64864155
• Sequencing Scaffolds: 18
• Novel Protein Genes: 25
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F043991	Metagenome	155	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F067846	Metagenome	125	Y
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F073671	Metagenome	120	N
F074985	Metagenome	119	N
F080165	Metagenome	115	N
F081456	Metagenome	114	N
F090516	Metagenome	108	N
F097525	Metagenome	104	N
F097526	Metagenome	104	Y
F101359	Metagenome	102	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099694_100042	All Organisms → cellular organisms → Bacteria	44436
Ga0099694_100121	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	28248
Ga0099694_100351	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	17687
Ga0099694_100481	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	15211
Ga0099694_100606	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	13469
Ga0099694_100664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	12907
Ga0099694_100884	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	10899
Ga0099694_100984	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	10051
Ga0099694_101148	All Organisms → Viruses	8972
Ga0099694_101178	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	8834
Ga0099694_101350	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	8038
Ga0099694_102085	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	5552
Ga0099694_102673	All Organisms → cellular organisms → Bacteria → Proteobacteria	4564
Ga0099694_103344	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3748
Ga0099694_103368	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3722
Ga0099694_105400	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2387
Ga0099694_106021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	2140
Ga0099694_108628	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099694_100042	Ga0099694_10004232	F074985	MELTDGGWYKTPRIVKGEDFLAHIHDTYASGNAMYVEFKASEGEVRVLEYRRLYDVDTENAVLFTINTYPQGNILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKRTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDDEKNKRYYYARRTTKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0099694_100042	Ga0099694_10004233	F036281	MFSLIRVSEGPVDIHELRSRYLGKLKTEDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNSEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAQEYYDYWTAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF*
Ga0099694_100042	Ga0099694_10004234	F027205	VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIKK*
Ga0099694_100042	Ga0099694_10004237	F043991	MSKKTPSVIDYFSLNGDVVEEANEFDGISLEDWIDKRSSIKPSWVGQYSQQMHFDLPDDTEVSFYKTPNVIYADILFAGGVRTILFKCRQKKNLTRFISRVLELANLGPKHVHPDFRA*
Ga0099694_100042	Ga0099694_10004239	F071329	MLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0099694_100042	Ga0099694_10004247	F067847	MFSHIIRVKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELNNL*
Ga0099694_100042	Ga0099694_10004251	F081456	MFEEPPIYYILISLIFLIVFGAISFATWMVWLTSIAFFAKLVVTAIGFLLCAMTVILYTISAE*
Ga0099694_100121	Ga0099694_1001212	F101359	MKKFLSKRSILVGALALVLGFITSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTAIGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK*
Ga0099694_100351	Ga0099694_1003517	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGVGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYYDLDNDVETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSQYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0099694_100481	Ga0099694_10048114	F059076	MTNRILLLGLLLGGASINAQTINEINAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLVVDKVGDVYQGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVDHGGNKYGVTTAPATVLLTKNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWIITLLVGKREAVNFTELNFNQGRSAEGVGFSDQTYKTGMENFLKKLE*
Ga0099694_100606	Ga0099694_10060612	F061925	MSWEYSINLDSEESVSSVVTNLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLTYCDTDEEVTLEHIFHSVI*
Ga0099694_100664	Ga0099694_10066412	F073671	MTNNKQAEHELAELHEKERSLEKALELVRERIRELVNYTDKNKEQK*
Ga0099694_100664	Ga0099694_1006645	F067846	MESLQAQWERKTFNDWDKQCSKEDDYNRAVEMEIESIKEDIANCDSDTLCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYKNGYILNDYSKG*
Ga0099694_100884	Ga0099694_10088412	F097525	MQQKKIMFKIQNAHQKIIFSIHGHRKRKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFERILANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKKE*
Ga0099694_100984	Ga0099694_1009849	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKRLYLSASLVFIVIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQEEAEQIIKFLMNNR*
Ga0099694_101148	Ga0099694_1011483	F105377	VRDFENLPLLTPEEALERAREMGWNRPLFDHGYRVRGLEAWKALETLIRQYDVEDLVIASFGLKGIEEIFDACAMLHERGWRLWQTTAKVYVGGELRTVQAIRAHYRGY*
Ga0099694_101178	Ga0099694_1011786	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDEPKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0099694_101350	Ga0099694_1013505	F042387	MICEVNGITSRKFNKKRYFMKRIILFFMAGLFLVSCSRENDKMNDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERVVFVYEKDFITSKIRYSQAGEELGKTNYQYSNRKLSSVIDEAVILDSGIQYKRVVTREYHYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENITKIHYEISKNVPNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSALAAEFCSLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK*
Ga0099694_102085	Ga0099694_1020851	F043990	LELSLLGIVVYANHKIEKSWIEGEFGVNMSNMNIDEKHRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEGLPPNGIPKQFLNTTNGYYKYVVDENDDRNFDILIVDTTQKEICIYYQ
Ga0099694_102673	Ga0099694_1026733	F097526	MTTDNTTAIAPYTQDGYRQLCERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEEAGRNEHSDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSRLTRQCEQNGSCDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMALLTIAEMTDTAPSMVACYLNGTGGEHLGRALAEKTVYPVTVVSNLAWLLHEQYKSGQLQRDLRHTAAASGNGEILAMLEDCQKILEQKNL*
Ga0099694_103344	Ga0099694_1033442	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFESNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0099694_103368	Ga0099694_1033683	F063777	MKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHFNDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE*
Ga0099694_105400	Ga0099694_1054003	F054111	MNKPLESITHEEFLKLMERLKNLQEFTFLEYTMAPEADIFYFNFMEKTVKIKWDLDYGLFLETEMLSTADRDLFLNILD
Ga0099694_106021	Ga0099694_1060212	F097526	MTENSTMATTIYTQDDYRRLCERLEDDTVVVTLRAHIDAFAAKGNRVLLRRLTEGLRIAGEMEKAGRNGHPTPEEQARRERWDSNYGRLQQHARMAGDQITNADNAAVSRLTAQCERNGRCDTDTELSVARDDAYGFAAALRDIPLNEKQTALLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQQKSGQLQRDLWHSAAALGSGDAEVREKPQ*
Ga0099694_108628	Ga0099694_1086282	F080165	MKNKKFILGILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKHDPLLAWVHAPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*