3300006297: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160603188

Overview

Basic Information

• IMG/M Taxon OID: 3300006297
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052481 | Ga0099630
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160603188
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71538075
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F051213	Metagenome	144	N
F055792	Metagenome	138	N
F067847	Metagenome	125	N
F077781	Metagenome / Metatranscriptome	117	N
F081510	Metagenome	114	N
F090517	Metagenome	108	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099630_1000022	All Organisms → cellular organisms → Bacteria	43437
Ga0099630_1000084	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	19960
Ga0099630_1001939	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3452
Ga0099630_1010903	All Organisms → cellular organisms → Bacteria	1157
Ga0099630_1012612	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1047
Ga0099630_1017649	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	829
Ga0099630_1020792	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii	742
Ga0099630_1024968	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	656
Ga0099630_1034976	Not Available	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099630_1000022	Ga0099630_100002236	F067847	MFSHIIRIKGIFDDEPTTKKLYFHLSRREMFDFIKRYDNVTSFEQWLQAAMDNEDLYTMMKFFDDLIGSAYGERQGERFVKNEQIKESFLNSPEYEELFDQLMDNPALVREFYQGILPEKIMKQVQQDPKYKELDSKLKETELKNL*
Ga0099630_1000084	Ga0099630_10000849	F051213	MKASKLLWAVVMALTFVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0099630_1001939	Ga0099630_10019392	F055792	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLGTEDGVIAETMVTGALECDLAIDCSLEEVRPVFVDESDDSTEAGTTWSRYSLETLQKEGYILFKGSILPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDVTCLDESIPLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA*
Ga0099630_1010903	Ga0099630_10109032	F103431	MINLDALVVGMLFFIQLFLQGIAWRVAIAHFFHAERGNAAAATFDGAFRENIADCHAEDDNDKNAESKEEGFHVCIPEG*
Ga0099630_1012612	Ga0099630_10126122	F090517	MNRRILSFCGLLLGLLFLASSCKNKKDTPRLELSSVELRQTVWNGTLEYKNAKYGPYSVYLSFVSDSIVEVSTFTTTDLTAAHDFKDLCSYAMDGRILTLRARDERYLNVSIDHNSWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL*
Ga0099630_1017649	Ga0099630_10176492	F081510	MKFNVNAIKSTAKTTWVTTKILGKKYAPYILLGAGLVGYGYSVYEGIKSGKKLEATKAKYEQMDAQGDPYSRMEVVTDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVEVDGEEIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTD
Ga0099630_1020792	Ga0099630_10207921	F051213	MRVSKFLWAVVMALTFVLTSCDPFSQNEPTIEGNRYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNS
Ga0099630_1024968	Ga0099630_10249681	F077781	APARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLCLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARPSPETLEISPLRAAT*
Ga0099630_1034976	Ga0099630_10349761	F032313	VPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRS